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New Lineages of Life Group
… bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine learning to identify new divergent lineages and expand … Exploring the fascinating world of giant viruses, which challenge …
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Natural Prodcast Episode 8: Eric Schmidt
… 8 of Natural Prodcast. This week, we have our conversation with Professor Eric Schmidt, from the University of Utah. … be related to each other, even though they had common elements. And so we really needed to get together. You know, … is really helpful because you’ve got experts in designing promoters and so on that we can consult in designing pieces …
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User Support
… a new login service, requiring the use of an ORCID account with two-factor authentication enabled to log in. Check our … tool tutorials, as needed Upon completion of all work associated with your proposal, your Project Manager will … access your data, share with collaborators, and coordinate publication with JGI scientists. Synthetic DNA constructs …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… develops a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring polar bears in winter scenes that came with crayons in various shades of white. To researchers … around the world. One expanded group is of viruses associated with bacteria; until now, most of the known RNA …
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Close association of RNA polymerase II and many transcription factors with Pol III genes
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Natural Prodcast Episode 23: Aaron Puri
… I really do want you all to hear this great conversation with Aaron Puri. He is an Assistant Professor from the … is alive and well and doing very well. She’s a real journalist now. Just not working with me. AARON PURI: No, it’s … is biofilm formation. So you’re producing different extra polymeric substances. But if there’s only a couple bacteria …
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Fungal & Algal Program
… to unlock their potential for bioenergy, environmental sustainability, and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates … associated with plants (mycorrhizae, endophytes, growth promoters, or pathogens) and as the most efficient degraders …
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Synthetic Biology Informatics Group
… Software engineers in the Synthetic Biology Informatics Group develop, … Biology Program .  Representative software includes: gRNA-SeqRET , an organism-agnostic CRISPR gRNA design tool … Yeast recombination and Golden Gate methods SynTrack and associated tools, which track samples through the JGI’s …
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Natural Prodcast Episode 16: Marcy Balunas
… kinds of biology, one of the best things that we do is work with this really great group of biologists that know what … And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much … we’ve been working with metals and in particular rare earth elements or Rare Earth metals with our cultures.  And we see …
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JGI-TMF Critical Minerals and Materials Call
… program seeks research proposals that integrate genomics with nanoscale science, accelerating discoveries and … made publicly available in accordance with the JGI’s Data Policy . In cases where the JGI provides customized analysis, the JGI also participates in publication of results. Go here for additionial information, …
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Natural Prodcast Episode 3: The Primer, Part 3
… drug discovery train moving, drug companies started working with some techniques referred to as “combinatorial … produce secondary metabolites. Do you recognize this? DNA 🡺 RNA 🡺 Protein ALISON: This is central dogma. DNA to RNA to … a cluster of genes, why can’t you just engineer you know, a promoter or an enhancer, an activator, to go ahead and, and …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… really happy today to be handing over our interview with Dr Elizabeth (or Betsy) Parkinson from Purdue … all these unknown clusters that if you see these regulatory elements, that you might have a catalog of signals or … all other kind of examples that have gene clusters with associated molecules that have these [penicillin binding …
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