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Genome Insider
… researchers — JGI Users — and dives into their work on all kinds of organisms, from plants and fungi to microbes and viruses. Listen in to explore the data that illuminates …
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Natural Prodcast Episode 12: Nadine Ziemert
… about natural products and the science and scientists of secondary metabolism. Welcome back. This will be episode 12 of … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all … it does take some improvements on things. So from your perspective on genome mining, what do you think it would …
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Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks
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Genome-Based Taxonomic Classification of Bacteroidetes
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Natural Prodcast Episode 7: Ben Shen
… Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hello, and welcome back for Episode … or…? BEN: Yeah. So, if I want to put it into perspective, right, so the enediyne structure – the enediyne … 65, I can say more than 60 different so-called families. So taxonomically speaking, they belong to different species.  …
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JGI@25
… Celebrating 25 years of genomics research 2022 marked the JGI’s 25th anniversary. … number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental challenges.  Commissioned for the JGI’s 25th …
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Genome-Based Taxonomic Classification of the Phylum Actinobacteria
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Micro-Scale Applications Group
… The Micro-Scale Applications group explores the genetic makeup of natural microbial communities using a variety of … the quality of single-cell genomes and directly link functional information with individual cells. Research Team    … internal analytical standards to accurately measure environmental microbiome activity levels.This functional assay …
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Sequencing Technologies & Products
… well-integrated across JGI departments to ensure a robust offering of sequencing capabilities and products to our … which includes the Sequencing Technologies team, relies on collaborations with Science Programs and Operations teams to enable the … An assay used for profiling transcription factor binding sites across entire genomes. This …
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VPF-Class: taxonomic assignment and host prediction of uncultivated viruses based on viral protein families
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… JGI-led team significantly expands the global diversity of large and giant viruses. While the microbes in a single drop of water could outnumber a small city’s population, the number of viruses in the same drop—the vast majority … a more global look at giant viruses by capturing genomes of uncultivated giant viruses from environmental sequences …
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How To Use Our Systems
… One of the JGI’s key assets is our user community, comprising a … who use JGI resources and expertise. These collaborations have yielded numerous, high-quality outputs, such as data, publications and software. The JGI supports the entire data …
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