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Fungal & Algal Program
… and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the … and environmental sustainability. Fungi, with million species, are essential for ecosystem functioning — … Program aims to streamline genome analysis workflows for microbial eukaryotes, build fungal and algal pangenomes, and …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… you here. Tell me what you think the terms we should be using for what we do are, and why there and why it’s … They produce a large array of different molecular species related– chemically related– but nevertheless we did … feature of many metabolites being produced throughout the whole pathway. And that is what we call secondary …
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Industry Engagement Program
… from diverse biological and environmental samples by using advanced computer analysis coupled with liquid … accessible, AI-ready large-scale data repositories for genome information with analysis tools for mining and … by an industry partner to perform a defined scope of work using the JGI’s unique facilities, equipment, and personnel. …
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Natural Prodcast Episode 12: Nadine Ziemert
… to get into first, and the standing trees. And he had this whole idea of NaPDoS , this computer program which uses … we’re thinking they’re obligate marine. There’s so far no species or no strains known that really grow in freshwater. … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all …
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Microbial species delineation using whole genome sequences
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Natural Prodcast Episode 20: Brian Bachmann
… screening methods, genome mining in cave microbiomes, and using engineered biosynthetic pathways and enzyme systems to … And it was a big deal. And you really had– I mean, the whole sequencing endeavor, had a cost, how much blood, … of thought with that. So some people are interested in cave microbial– people are interested in the more extreme …
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Natural Prodcast Episode 23: Aaron Puri
… to predict or just understand better the language of microbial cell-cell communication. And he told us about his … I could see myself going in the future. So, then we were using these probes to look at host pathogen interactions … sometimes you can be out of luck right or it could be a whole grad student thesis to synthesize a 13C-labeled …
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Partnerships: Myco-Ed
… genomic resources empower students through isolation and genome sequencing of new fungal species.  Students collect fungi, sterilize tissue, isolate … Myco-Ed has:  ~50 lineages selected for sequencing 16 genomes released 20 members from 15 institutions 300+ … solution for production of high-quality fungal reference genomes, this program is an important initiative that …
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Natural Prodcast Episode 15: Katherine Duncan
… Right. Kate Duncan: And Pseudonocardia . And we’ve got new species which we’re currently in the process of almost … And sometimes, in terms of biological activities– like antimicrobial or something– sometimes a little difference is … is a whole bunch of information that maybe never makes its publication. And these are little tips, you know, how to …
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Micro-Scale Applications Group
… Applications group explores the genetic makeup of natural microbial communities using a variety of cutting-edge approaches.  Our group also … technology in order to enhance the quality of single-cell genomes and directly link functional information with … To provide additional functional insights into microbial genomes, the JGI now uses laser microdissection to …
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CSP Functional Genomics
… ‘omics capabilities to enhance understanding of gene and genome function, particularly those not readily achievable … to this call may be submitted to the JGI at any time using a simple web-based form and are reviewed annually. For …
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Metabolomics Program
… them with genomic data to enhance our understanding of genome science, organisms, and ecosystems at the molecular … exploration of energy and nutrient exchange, as well as microbial and plant responses to environmental changes. With … systems can provide novel insights into the impact of microbial symbionts and their hosts on ecosystems.   …
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