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Recurring patterns in bacterioplankton dynamics during coastal spring algae blooms
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Polar Phytoplankton Need Zinc to Cope with the Cold
Antarctic algae need their vitamins; zinc fuels some of their … the chilly waters of Antarctica, tiny ocean-dwellers called phytoplankton play an outsize role in cycling carbon and … That zinc turns out to be extremely important for polar phytoplankton.  After peering into the function and activity …
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Natural Prodcast Episode 16: Marcy Balunas
… tell us about this squid-microbe relationship. Or is it a microbial community with microbial community relationship?  … And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much … Immunology , and we wish her and her family all the best during that transition. In this episode, we discuss her work …
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Natural Prodcast Episode 11: Marnix Medema
… the more computational aspects of it, which I had found out during my Masters that I really liked. So in the end I chose … IMG kind of hooks into IMG’s data. IMG being Integrated Microbial Genomics at JGI, a large data set of bacterial … Yeah. There’s so much to do there especially looking at metagenomes. So we’re actually eager soon to also work on …
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New Lineages of Life Group
Our research is focused on the discovery and characterization of … and biogeochemical cycles. Research Team    … A complete publication list available at Google Scholar. Schulz, C … nucleus of amoebae. The ISME Journal. 8 (8), 1634-1644 … Publications … For further details, please reach out to the …
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Microbial Metagenomes Across a Complete Phytoplankton Bloom Cycle: High-Resolution Sampling Every 4 Hours Over 22 Days
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Project Management Office
The JGI Project Management Office carries out a number of activities to … Tijana Glavina del Rio Metagenomics         Danielle Graham Microbial Program Nancy Hammon Workflow Planning Manager …
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Natural Prodcast Episode 15: Katherine Duncan
… … Dan Udwary: Hey, Alison Takemura: Hey, Dan. Dan Udwary: Today … And sometimes, in terms of biological activities– like antimicrobial or something– sometimes a little difference is … is a whole bunch of information that maybe never makes its publication. And these are little tips, you know, how to …
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Candidatus Prosiliicoccus vernus, a spring phytoplankton bloom associated member of the Flavobacteriaceae
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Viral Genomics Group
Microbes drive critical ecosystem functions and affect global nutrient cycling, … parameters driving virus:host dynamics in environmental microbial communities. This involves both experimental and … abundant ocean viruses.  Nature . 537:689-93. … Selected Publications … For further information contact the Group …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … of the IMG data portal , which is a larger portal for microbial genomics. IMG stands for Integrated Microbial … set of MAGs to date. Here, at JGI, we took more than 10,000 metagenomes, many of which were sequenced at JGI, and some …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… are familiar with JGI’s IMG data portal , the Integrated Microbial Genomics, there was a subsection of that called … the rest of the archaea and fungal genomes and then work on metagenomes. So yeah. So we’ve taken every public sequence … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever …
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