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The Mycological Curriculum for Education and Discovery  (Myco-Ed) is a … train students and professors in laboratory techniques and data analyses compile original data for improving fungal … and potential applications. … The Department of Energy Systems Biology Knowledgebase (KBase) is involved in the …

… … DAN: Hey, everybody. Welcome back for another episode of … absence of oxygen. But these are the next step in the food web. So these are organisms– if you think about maybe you’re … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …

… … Dan Udwary: You’re listening to the Department of Energy … still a collaboration, indeed, with my group. And Tilmann Weber ’s group, and in particular, Kai Blin and Simon Shaw … a CRISPR-Cas system for that group of bacteria and that enabled a mark out of that gene cluster. And that was able …

… … DAN UDWARY: You’re listening to the Department of Energy … mining and microbes with Mohammad Alanjary and Tilmann Weber to be a really valuable piece that shaped my thoughts … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all …

… … DAN UDWARY: Hey, everyone! Welcome to the “Self Promotion … all of those have ended up in the SMC database. There’s a web front end for it, and it’s just a massive pile of data. … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever …

The JGI’s Metabolomics Program works to uncover the roles of small … molecules in biological systems, linking them with genomic data to enhance our understanding of genome science, … toolkit links metabolomics with genomics data.  This is a web-based service returns a list of scored reaction and gene …

With collaborative user projects, the JGI’s Plant Program delves into … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of … It is now available for both eukaryotic and microbial metagenome assemblies. It is also available as an app in …

Every approved proposal starts with a User Agreement — before any … of samples for sequencing, or the submission of sequencing data for synthesis. This agreement, required by the DOE for … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …

The JGI has diverse capabilities in: DNA and RNA sequencing, Sample … sample receipt to completion of standard analysis.  Raw data is provided for all sequencing products below. In … metabolites and unidentified features in spectra. 167/214 Metagenome Metatranscriptome Environmental transcript …

Below is a brief description of the process needed to prepare and … metadata is collected via spreadsheet or directly via a web interface prior to shipping samples to the JGI. PI sends Project Manager (PM) a list of organism names (or for metagenomes, sample names).  Need help naming your …

Below are a list of webinars that can help you through the submission process by … understanding the capabilities and resources available for your project. Watch all the webinars here . You can find additional webinars covering how to use our data portals here.  … … Shining a Light: Advanced Photon …

Developed in 2017, the PDT was established in part to help better-connect industry to … high-throughput sequencing and other resources at the JGI for projects of relevance to Department of Energy missions. … for farmers concerned with improving sustainable soil management practices. … In June 2020, the Department of …