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Natural Prodcast Episode 20: Brian Bachmann
… existed for millions of years and relatively stable– no lights, constant temperature, constant humidity. And they … my colleague Allison Walker at Vanderbilt is coming up with machine learning techniques just to look at clusters and start to … his work in drug discovery, genome mining from cave environments, and using biosynthetic engineering and synthetic …
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Plant Program
… challenges by exploring plants’ role in capturing carbon, detoxifying soils, interacting with other organisms, and adapting to environmental changes. The program lays the groundwork for sustainable solutions to current problems facing humanity. A major focus are …
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Viral Genomics Group
… Microbes drive critical ecosystem functions and affect global nutrient cycling, however they do so under strong constraints exerted by viruses. Research in the viral … parameters driving virus:host dynamics in environmental microbial communities. This involves both experimental and …
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Natural Prodcast Episode 16: Marcy Balunas
… one that the Hawaiian bobtail squid is famous for is the light organ.  And the light organ houses Vibrio fischeri, … And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much … noise from the metabolomics data. We’ve done a lot of work learning about how to use statistical analysis to prioritize …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… it. I’m keeping to my schedule. This should be coming out on the first Thursday of the month, just like I promised. … outreach program to get kids interested in microbiology and microbial chemistry. All good stuff, and I hope you enjoy … lab, I got great exposure to working with Streptomyces, learning more about genome mining, as well as isolation and …
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Doubling Down on Known Protein Families
… Using a novel computational approach, researchers confirm microbial diversity is wilder than ever. Imagine researchers exploring a dark room with a flashlight, only able to clearly identify what falls within that … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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New Research Sheds Light on Diversity in the Deep Sea
… Microbial communities living near hydrothermal deep-sea … water. These vents are too deep in the sea to get any sunlight, and yet they still support a unique array of microorganisms adapted to living in extreme conditions. At these vents, and underwater volcanoes,  …
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Natural Prodcast Episode 8: Eric Schmidt
… Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hey there and welcome back for … there you go. A tiny bit of background on this: Most of the machinery in any living organism are proteins, which are made up of chains of amino acids. …
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Natural Prodcast Episode 3: The Primer, Part 3
… Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hey there. This is Dan again, and … And so it was thought that combinatorial chemistry, learning some of the lessons from natural products, in terms … DNA sequence – sequences for the genes that code for the proteins that produce secondary metabolites. Do you …
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JGI Portals
… new algorithms, models and tools in support of DOE mission priorities. Data discoverability and accessibility are … the use of an ORCID account with two-factor authentication enabled to log in. Check our Help Site for additional information, including a Login Walkthrough and FAQ . …
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Natural Prodcast Episode 22: Alison Narayan
… DAN UDWARY: Hey everyone. Welcome back to Natural Prodcast. This continues the … So it’s super fun to hear about what folks are up to in a slightly different niche in chemical enzymology. So, we … it’s been a long time since I’ve actually isolated some proteins off the bench. I am well aware of the pitfalls of …
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Accelerating Metagenomics Discoveries with Deep Learning
… On July 6, scientists from Lawrence Berkeley National … with 86 participants in an online workshop to harness deep learning for metagenomic data.  Metagenomic data, or DNA … from metagenomic data. In deep learning, a branch of machine learning, data is passed through algorithms …
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