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The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with … exploration of energy and nutrient exchange, as well as microbial and plant responses to environmental changes. With … state-of-the-art instrumentation and informatic approaches.By bridging genomics with metabolomics, the Metabolomics …

… or the genes that could encode for that right next to a larger biosynthetic gene cluster the products of the … has been fun because then we’ve been able to blow out the scale a little bit for the project. DAN: Do you see broader … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …

… constant developments to meet the ever-changing demands of our users. … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic … system. … IMG/PR is a plasmid genome resource featuring the largest collection of plasmids automatically identified from …

… as well as the development of novel methods to enable large-scale comparative analysis, mining and visualization of big … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …

The JGI’s DNA Synthesis Program supports a wide range of projects, from single-gene synthesis to the synthesis of … biochemicals. The DNA Synthesis Program aims to generate large datasets to explore sequence-function relationships, … … Synthesis Capabilities & Offerings … BOOST … Integrated Microbial Genomes and Microbiomes … Mycocosm … Phytozome … …

… enable the exploration and identification of small and large structural variation — this variation drives major … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of … produces high-quality de novo assemblies for very large-scale single genomes, based on the JGI assembly tool …

… we’re all sharing here. We’re all working together on these larger problems. And so what I’m hoping we can do is kind of … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever … hopefully, the system that we have built will continue to scale. So far it’s– so far, so good. But we’ll add more …

… group aims at improving our collective understanding of ecological and evolutionary parameters driving virus:host dynamics in environmental microbial communities. This involves both experimental and … abundant ocean viruses.  Nature . 537:689-93. … Selected Publications … For further information contact the Group …

… .” This is kind of like a CSP, but you would be proposing a larger project that requires the work of two or more DOE … a new investigator who wants to try out something smaller scale, or if you’re just curious to know more, then I really … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we …

Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of … physical separation of a biologically relevant unit from a microbial community, such as a microcolony, microbial … ), binning Depends on project Microbial Minimal Draft, Isolate Draft quality microbial assembly of short-read …

The Micro-Scale Applications group explores the genetic makeup of natural microbial communities using a variety of cutting-edge …

… research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and … and biogeochemical cycles. Research Team    … A complete publication list available at Google Scholar. Schulz, C … and Horn (2015) Intranuclear bacteria: inside the cellular control center of eukaryotes. Trends in cell biology. 25 …