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Natural Prodcast Episode 15: Katherine Duncan
… inside them. And this was, I think it must’ve been about 2001, maybe, and so it was before smartphones and before … that I’ve appreciated since starting my own group is these tools, in terms of looking at the chemistry produced by … is a whole bunch of information that maybe never makes its publication. And these are little tips, you know, how to …
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Partnerships: Myco-Ed
… fungal biology teaching labs. The purpose of the program is to: train students and professors in laboratory techniques and data analyses compile original data for improving fungal … ~50 lineages selected for sequencing 16 genomes released 20 members from 15 institutions 300+ students 800+ …
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User Support Analysis Group
… with main focus areas being genome variation, transcriptomics and epigenomics. Our work varies in scope from the development of highly customized analysis workflows for new product types, to the development of automated analysis pipelines for …
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Plant Microbial Interactions Group
… pathogens, and associated viruses that all contribute to a dynamic ecosystem. We are interested in how plants … by microbial partners. We use a variety of genomics-powered tools to study this complexity, including … characterization methods, in addition to bioinformatics tools to elucidate phage function in this tripartite …
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Natural Prodcast Episode 12: Nadine Ziemert
… secondary metabolism. Welcome back. This will be episode 12 of Natural Prodcast. And it’s our conversation with Nadine … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all … more into the meta genome mining. We started to build the tools for natural product researchers that easily can …
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Fungal & Algal Program
… Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, environmental … the biological mechanisms that enable fungi and algae to play a vital role in carbon cycling, biodegradation and … and environmental solutions, fostering a bioeconomy powered by nature’s resources. …
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JGI Portals
… The JGI’s data stewardship expertise and infrastructure enable a broad … to leverage our data to develop new algorithms, models and tools in support of DOE mission priorities. Data … Notices Data Portal files will be inaccessible July 22–July 24 for computing upgrades . We regret any …
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How to Submit Sequencing Samples
… Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI. … follow the steps outlined below. Click the drop-downs to learn more about each step in the process. If you have … Weight DNA extraction and quality control (from PacBio) 2) Review guidelines detailing quantity and quality …
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Secondary Metabolites Program
… for fundamental growth, provide critical advantages to the organisms producing them, and are often involved in … products and bioenergy crop enhancement. The program aims to tap into the largely unexplored biochemical diversity within … support users, our efforts include developing computational tools for predicting biosynthetic gene clusters (BGCs), …
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Single Cell Research Group
… Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of uncultivated taxa of … highlights our skewed understanding of microbial metabolism towards a minority of cultivated bacteria, still persists to … Bacteria and Archaea has steadily been widening since 2005. This gap is also reflected in the strongly biased …
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Frequently Asked Questions: Project Management
… Glavina del Rio , Danielle Graham , or Miranda Harmon-Smith DNA Synthesis projects: Miranda Harmon-Smith Metabolomics … then be used to submit proposals, sample and project metadata, and to access JGI tools and systems. … Go to the “ edit contacts ” page in your account. Use the form …
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An Automated Tool for Assessing Virus Data Quality
… can help researchers assess virus sequence fragments and data quality. The Science Through advances in sequencing … to this point, there has been a lack of fast and accurate tools for researchers to assess the quality of … suite, as well as sequences from the Global Ocean Virome 2.0 dataset based on open ocean samples. CheckV identified a …
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