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… off through these areas. And you can do– with a teaspoon of soil from outside, you maybe have to do a 10,000-fold … in the cave project just now switching from intermicrobial interactions, studying intermicrobial interactions by imaging interactions between predatory and nonpredatory organisms– DAN UDWARY: …

Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all … necessarily see. So it doesn’t seem to be a correlation between biodiversity in taxa and biodiversity in secondary … transcriptomics, metabolomics, and natural products in plants, fungi, and microorganisms. If you want to …

… and affect global nutrient cycling, however they do so under strong constraints exerted by viruses. Research in the … of green sulfur bacteria with long standing virus-host interactions. ISME J.   15 , 1569–1584 Roux, S. et al. … abundant ocean viruses.  Nature . 537:689-93. … Selected Publications … For further information contact the Group …

… right from the beginning, I always wanted to be true to my roots, and always work with marine systems because that’s … the co-mentor of Patrick. And Patrick would spend time between our two laboratories doing metagenomics, some … Because seaweeds are complicated. They’re messy.  Dan: Plants are hard. Brad: Yeah, plants are hard, but they’re …

… in JGI systems. Users not involved with the proposal under which the data were generated (e.g. not PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way … repositories until the earliest of three points:  (1) publication of the data (including, but not limited to, …

… of secondary metabolites across bacteria, fungi, algae and plants. These molecules, which are not essential for … … The Secondary Metabolites Program targets the vast and underexplored reservoir of secondary metabolites produced by … algae and plants. These compounds are key to organisms' interactions with their environments and with each other, …

… really fascinating to sort of be able to work in this cross between R&D and business. And I had a foot in both camps to … organisms, to looking at pathways, and to looking at the interactions of organisms and environments.  DAN: Where do … help the Society grow. And so I’ve been the chair of the publications committee for the last, what is it now, five …

… do the bioinformatics and to synthesize these results into publication? So there’s this really important because we … these proposals based on what’s uploaded, right? Don’t read between the lines. So if key PI is not uploading their CV, … related to human health or creating vaccines, human gut microbiomes. We don’t do things related to human health. In …

… then we were using these probes to look at host pathogen interactions mostly with like enteric bacteria. And I really … could imagine if you have two colonies of bacteria in the soil or something and they’re competing with each other, if … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …

…   … Phylogenetic diversity estimates show that the gap between cultivated and uncultivated Bacteria and Archaea has … Kyrpides N. C., Woyke T . Giant virus diversity and host interactions through global metagenomics.” Nature 578(7795): … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …

… that maps gene expression patterns in the  Arabidopsis root, profiling nearly 100,000 single root cells and … the largest integration of single-cell datasets in plants and provides a foundation for still larger efforts in … with resulting reports and a  perspective article . Publication: Shahan R et al.  A single cell Arabidopsis root …