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Institutional User Agreements
… rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …
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Natural Prodcast Episode 13: Francisco Barona Goméz
UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast– a podcast about natural … So if you want to learn about the differences between primary metabolism and centralized metabolism, or what a … of natural product biosynthesis in bacteria ” The ActDES publication came out after we talked. It looks like a great …
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Fungal & Algal Program
… and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the … culture collections to produce hundreds of diverse algal genomes, which will be made accessible through the PhycoCosm … portal. The Fungal & Algal Program aims to streamline genome analysis workflows for microbial eukaryotes, build …
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Project Management Office
… of Work, completing a formal User Agreement, and ultimately launching the user’s project. See below for details …
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Offerings & Capabilities
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Microbiome Data Science Team
… 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, Science … genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.  Nature Biotechnology … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …
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Single Cell Research Group
… to date. Research Team    … Phylogenetic diversity estimates show that the gap between cultivated and uncultivated … in the strongly biased representation of sequenced genomes in the public domain, the bulk of which belong to … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …
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Metabolomics Program
… them with genomic data to enhance our understanding of genome science, organisms, and ecosystems at the molecular … microbes, and ecosystems. Identifying and analyzing primary and secondary metabolites helps uncover their roles in … experimental manipulations while being simultaneously imaged and sampled.  Combining collected metabolomics data …
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Products
… determine coverage of variants depends on project Fungal Minimal Draft Lower coverage short-read whole genome shotgun sequencing Assembly, annotation ( Mycocosm ) … annotation ( IMG/M ) Depends on project Metagenome Minimal Draft Low-coverage short-read assembly & annotation of …
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Partnerships: Myco-Ed
… genomic resources empower students through isolation and genome sequencing of new fungal species.  Students collect … Myco-Ed has:  ~50 lineages selected for sequencing 16 genomes released 20 members from 15 institutions 300+ … into undergraduate teaching laboratories with minimal overhead (cost of media, ITS sequencing and tissue …
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Natural Prodcast Episode 20: Brian Bachmann
… in the early 2000s called Ecopia, which was a very early genome mining company, back when DNA sequencing of natural … also done things where we’ve grown organisms in ultra minimal media. So you could take International Streptomyces … find– we found organisms that will only grow on the minimal medium, which is probably more mirroring what happens …
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Frequently Asked Questions: Project Management
… listed on the “info” page for that organism on the Genome Portal . … You can view the status of all public … for individuals associated with your proposal. Find our Publications Policy on our Data Policy & Support page.    … … work done by the JGI. More information is available in our Publications Policy on our Data Policy & Support page.  … …
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