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Microbial Program
… The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those associated with microeukaryotes, enhances our understanding of terrestrial biogeochemical cycling and …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast– a … for example, in terms of the stereochemistry, such that single changes can lead to a particular high activity … Episode Transcript … of natural product biosynthesis in bacteria ” The ActDES publication came out after we talked. It looks like a great …
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How to Submit Sequencing Samples
… Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes … sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality has been the rate-limiting … to the  JGI. The documents below (posted with permission) demonstrate the importance of proper nucleic acid …
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Frequently Asked Questions: Project Management
… Barry or Vivian Ng Prokaryotic projects: Tijana Glavina del Rio , Danielle Graham , or Miranda Harmon-Smith DNA … You can visit the Products & Offerings section of our website for more details, including a downloadable pdf of products … The majority of JGI projects come from the user community. Find out about …
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Microbiome Data Science Team
… is currently experiencing a revolution brought on by rapid developments in genomics and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … The research efforts of the group have concentrated in demonstrating the power of data science in tackling grand …
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Sequencing Submission Requirements for DNA Synthesis
… sequences to the JGI DNA Synthesis program, please include the following items: … files into well-formed GenBank files. ApE is an open source desktop application written by M. Wayne Davis or commercial options include SnapGene . … add the characters “.gb” (no quotes, just .gb) to the end of your file name. …
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DOE Metrics
… FY 2026 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal  Actual Total*   Actual % of Goal   Goal (hours)**   Actual Total   Actual % Goal   FY … Q3 2026 175     2,164     Q4 2026 175     2,208     *Includes Illumina and PacBio sequencing platforms. **Operating …
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Mining New Frontiers: The Critical Minerals and Materials Joint Call
… for researchers to request the capabilities and expertise of both national user facilities in one research proposal.  … with nanoscale science, accelerating discoveries and developing transformative bio-based technologies that … of critical minerals and materials. The proposal submission deadline is March 31, 2026 .  …
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Natural Prodcast Episode 20: Brian Bachmann
… DAN UDWARY: Hey everyone and welcome back to a new session of Natural Prodcast. I’ve got two things I wanted to tell … this week is with Professor Brian Bachmann from Vanderbilt University’s Chemistry Department, where he is the … come, though, too when you start talking about going after single gene clusters. BRIAN BACHMANN: That’s right. JACKIE …
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Meraculous: De Novo Genome Assembly with Short Paired-End Reads
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Natural Prodcast Episode 3: The Primer, Part 3
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … really simple in terms of understanding it because it’s an assembly line. You just go down the string of beads and each … Episode Transcript … This the third episode of Natural Prodcast, and the third and final part of our …
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Natural Prodcast Episode 23: Aaron Puri
… DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m working on this the … and they were able to synthesize the genes for every single one of those and put them in individual plasmids and … Episode Transcript … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …
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