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Institutional User Agreements
… rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is … a version of the User Agreement between HHMI, your Host Institution and LBNL is required. NOTE:  If a PI … PI is named during the performance period, your Project Manager must be notified immediately. Either of these changes …
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Natural Prodcast Episode 6: Marc Chevrette
… got really high GC content, which means their base usage is skewed, and that can mess with some of the technology … So a lot of my work is as focused on insects As a host, and a little bit of my newer work is focused on … when you’re in a community? How is the microbiome being shaped by different types of secondary metabolites? How does …
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Mission
JGI Mission As a U.S. Department of Energy Office of Science user facility supported by the … scientific approaches to these challenges.     Our homepage video includes external footage from:  University of … Understand the assembly, function, and the behavior of microbiomes and manipulate them to facilitate microbial …
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Synthetic Biology Lab
… as user facility that aims to provide access to state-of-the-art DNA synthesis and assembly technologies to the … engineering pathways to function in heterologous hosts, by combining combinatorial synthesis, high-throughput … methodologies, and statistical frameworks for inferring genotype to phenotype associations. Research Team    … For …
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Natural Prodcast Episode 12: Nadine Ziemert
Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all … at the end to get the compound expressed in a heterologous host strain. DAN UDWARY: Yeah, sure. That’s very similar to … easily can identify secondary metabolite pathways in metagenomes, which is still hard to do. We are mining a lot of …
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Secondary Metabolites Program
Secondary Metabolites Program focuses on the exploration of secondary metabolites across bacteria, fungi, algae and … essential for fundamental growth, provide critical advantages to the organisms producing them, and are often involved … under standard laboratory conditions by their native hosts. We are developing cell-free based systems to express …
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New Lineages of Life Group
… in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and … and biogeochemical cycles. Research Team    … A complete publication list available at Google Scholar. Schulz, C … (5), 255-255 Schulz et al. (2020) Giant virus diversity and host interactions through global metagenomics. Nature. 578 …
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Natural Prodcast Episode 9: Roger Linington
… … DAN: Welcome back for episode 9 of Natural Prodcast. This week, Alison and I talk to Roger … discovery, predominantly in diseases of importance to each host country. It was built very much on the foundations of … the idea that you could go internationally to do the next stage of your training and that there might be more to be …
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Data Policy
PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way … projects as described above, but JGI portals will still host use-restricted data until the period of use-restriction … in scientific publications. … Read more about our data management practices and the resources we provide. … Data …
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Natural Prodcast Episode 8: Eric Schmidt
… together to make small peptides. Those are fun, because the host organism can use whatever amino acids it has access to, … end, we took an approach that was kind of a simplified metagenome sequencing approach to pick this system apart.  … you’d like to read more about this, I highly recommend his publication last year, “The Biosynthetic Diversity of the …
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Host genotype controls ecological change in the leaf fungal microbiome
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A Plant Root Atlas for Tracking Developmental Trajectories
A collaborative team led by Geoffrey Schiebinger at the University of British Columbia, … that maps gene expression patterns in the  Arabidopsis root, profiling nearly 100,000 single root cells and … with resulting reports and a  perspective article . Publication: Shahan R et al.  A single cell Arabidopsis root …
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