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FICUS Overview
… to more easily integrate the expertise and capabilities of multiple Department of Energy Office of Science National … A Letter of Intent is required. For accepted proposals, sequencing, synthesis, metabolomics and analysis will be … provides customized analysis, the JGI also participates in publication of results. … All proposals undergo technical …
Learn more
CSP Large Scale Call
The Community Science Program Large Scale Call is focused on genomic science projects that address sustainable biofuel and bioproducts production, leveraging systems-based … and track record of the applicant. For accepted proposals, sequencing, synthesis, metabolomics and analysis will be …
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User Programs
For accepted proposals, sequencing, synthesis, metabolomics and analysis will be paid for by the Department of Energy’s funding of the JGI. There is no cost to the user … FICUS CSP Large Scale CSP New Investigator CSP Functional Genomics Status CLOSED CLOSED ONGOING ONGOING Who Should …
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Viral Genomics Group
… constraints exerted by viruses. Research in the viral genomics group aims at improving our collective understanding of ecological and evolutionary parameters driving virus:host … abundant ocean viruses.  Nature . 537:689-93. … Selected Publications … For further information contact the Group …
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Natural Prodcast Episode 23: Aaron Puri
… … DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m working on this the … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum … 2023 Aug 31;14(4):e0101023. doi: 10.1128/mbio.01010-23. Publication: Cummings DA Jr. Methylotroph Quorum Sensing …
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User Support
The JGI Project Management Office carries out a number of activities to facilitate … that will be subject to the DOE JGI’s capabilities for sequencing, synthesis and/or metabolomics. Once materials … access your data, share with collaborators, and coordinate publication with JGI scientists. Synthetic DNA constructs …
Learn more
User Support Analysis Group
… focus areas being genome variation, transcriptomics and epigenomics. Our work varies in scope from the development of highly customized analysis workflows for new product … development of automated analysis pipelines for standard sequencing products performed at scale. Our group also …
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Single Cell Research Group
… to only three phyla. The Woyke group uses single-cell sequencing as a means to begin filling this gap. A primary … focused on the application of  function-driven single-cell genomics . Here, single cells are characterized and selected … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …
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FICUS-NERSC/KBASE
… community as a user facility pioneering functional genomics to solve the most relevant bioenergy and … plan is written into a Statement of Work document. … For sequencing projects, once work is under way, raw sequence … more customized analysis, the JGI also participates in publication of results. … Submission … More on Sequencing …
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Mission
JGI Mission As a U.S. Department of Energy Office of Science user facility supported by the … program, the Joint Genome Institute provides advanced genomic capabilities, large-scale data and professional … of Energy.   The JGI provides integrated high-throughput sequencing, DNA design and synthesis, metabolomics and …
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Natural Prodcast Episode 12: Nadine Ziemert
I think. DAN UDWARY: Yeah, and that was a JGI Community Sequencing Project. You’re right, yeah. NADINE ZIEMERT: Yes. … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all … I think GTDB also started that. But I think taxonomy and genomic data are still kind of a mess. DAN UDWARY: Yeah, …
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Natural Prodcast Episode 13: Francisco Barona Goméz
I think the important thing to remember is that, thanks to genomics, we now know that it is very hard to find stuff … us, we want to hear from you. We have projects in genome sequencing, DNA synthesis, transcriptomics, metabolomics, … of natural product biosynthesis in bacteria ” The ActDES publication came out after we talked. It looks like a great …
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