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… … DAN UDWARY: Hey everyone and welcome back to a new session of Natural Prodcast. I’ve got two things I wanted to tell … in the early 2000s called Ecopia, which was a very early genome mining company, back when DNA sequencing of natural … really complex bioactive natural product molecules. It’s a wide ranging conversation, and we could have gone on for a …

… and uncultivated Bacteria and Archaea has steadily been widening since 2005. This gap is also reflected in the strongly biased representation of sequenced genomes in the public domain, the bulk of which belong to … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …

… schedule. This should be coming out on the first Thursday of the month, just like I promised. Now I just have to make … exposure to working with Streptomyces, learning more about genome mining, as well as isolation and a little bit of … not all coming from actinos. So that, we have a little bit wider spread since we're just doing bioinformatic searches. …

Undergraduate Research Experience (CURE) that consists of coordinated hands-on experiments across fungal biology … genomic resources empower students through isolation and genome sequencing of new fungal species.  Students collect … and publicly available datasets encompassing a wide array of fungal genomes, along with curated metadata to …

Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way …

… for researchers to request the capabilities and expertise of multiple DOE National User Facilities in one research … provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS … a researcher, briefly describing the project motivation, experimental design, capabilities to be used and DOE mission …

… products field as it relates to structure elucidation and genome mining, and how we might start to better connect … – it’s really a bit of a mess. And many of the system wide tools that people would like to build would greatly … analytes from noise, and thinking about best practices for experimental design, and which is the best instrument for a …

Breaking Bad, I guess. But no, you trained me in how to genome mine, so thank you for that. And you had to put up … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever … that have been affiliated or– there’s been some kind of experimental analysis that can correlate those clusters to a …

… was really before– or kind of around about when the first genome sequencing was done. But natural products– marine … is a whole bunch of information that maybe never makes its publication. And these are little tips, you know, how to … . It’s a fantastic community-built resource for experimental protocols, media recipes, plasmid maps, useful …

… 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, Science … 356: 82-85 Ovchinnikov S. et al. (2017) Protein structure determination using metagenome sequence data. Science   … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …

The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, environmental … and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the …

… scientific community and require constant developments to meet the ever-changing demands of our users. … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to …