Search

… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast– a podcast about natural … use for BGCs. DAN UDWARY: It’s sort of a database of known experimentally validated natural product clusters. FRANCISCO … of natural product biosynthesis in bacteria ” The ActDES publication came out after we talked. It looks like a great …

… this identification, metabolomics enables functional genome annotation, improves understanding of the role small … are generated for metabolites extracted from a variety of experimental samples, including organisms (e.g. microbes, … as different types of environments (e.g. soil, lake).  A wide range of metabolites are identified using LC-MS/MS …

… DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m working on this the afternoon of the day I’m due to release it, which is not ideal for me keeping myself on … And it actually was jumping onto the I ntegrated Microbial Genomes and Metagenomes, the IMG platform that JGI has that …

… Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of uncultivated taxa of interest. One such … in the strongly biased representation of sequenced genomes in the public domain, the bulk of which belong to …

… DAN UDWARY: Hey everyone and welcome back to a new session of Natural Prodcast. I’ve got two things I wanted to tell … in the early 2000s called Ecopia, which was a very early genome mining company, back when DNA sequencing of natural … really complex bioactive natural product molecules. It’s a wide ranging conversation, and we could have gone on for a …

… The CSP Functional Genomics call is to enable users to perform state-of-the-art functional genomics research and to help them … ‘omics capabilities to enhance understanding of gene and genome function, particularly those not readily achievable … data usage by the applicant/community, and track record of the applicant.  Learn about the general review process or …

… schedule. This should be coming out on the first Thursday of the month, just like I promised. Now I just have to make … exposure to working with Streptomyces, learning more about genome mining, as well as isolation and a little bit of … not all coming from actinos. So that, we have a little bit wider spread since we're just doing bioinformatic searches. …

… Undergraduate Research Experience (CURE) that consists of coordinated hands-on experiments across fungal biology teaching labs. The purpose of the program is to: train students and professors in laboratory techniques … genomic resources empower students through isolation and genome sequencing of new fungal species.  Students collect …

… Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data Policy. It is our mission to support … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way …

… products field as it relates to structure elucidation and genome mining, and how we might start to better connect … – it’s really a bit of a mess. And many of the system wide tools that people would like to build would greatly … analytes from noise, and thinking about best practices for experimental design, and which is the best instrument for a …

… and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … advances in management, processing and visualization of “big data,” and artificial Intelligent/machine learning … discoveries and catalyzing a major transition of biology into data science.  Research in the Kyrpides group focuses on …

… Breaking Bad, I guess. But no, you trained me in how to genome mine, so thank you for that. And you had to put up … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever … that have been affiliated or– there’s been some kind of experimental analysis that can correlate those clusters to a …