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… off today with my interview with the Director of the Joint Genome Institute and head of the Secondary Metabolites … and rate and drive down the cost of producing riboflavin at scale.  DAN: Got it.  NIGEL MOUNCEY: And I did that for … help the Society grow. And so I’ve been the chair of the publications committee for the last, what is it now, five …

… Celebrating 25 years of genomics research 2022 marked the JGI’s 25th anniversary. … to advancing the frontiers of environmental and energy genomics. The two-story mural at the Integrative Genomics …

… Breaking Bad, I guess. But no, you trained me in how to genome mine, so thank you for that. And you had to put up … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever … hopefully, the system that we have built will continue to scale. So far it’s– so far, so good. But we’ll add more …

… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast– a podcast about natural … I think the important thing to remember is that, thanks to genomics, we now know that it is very hard to find stuff … of natural product biosynthesis in bacteria ” The ActDES publication came out after we talked. It looks like a great …

… in the early 2000s called Ecopia, which was a very early genome mining company, back when DNA sequencing of natural … tell us what’s active, which peak is active before we even scale up. The reason that we did that was to fit what we … a good catalog of what’s out there so that we can do more comparative analysis and maybe– I don’t know– start to put …

… are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental microbial … are influenced by microbial partners. We use a variety of genomics-powered tools to study this complexity, including …

… Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of the product and deliverables as well as target cycle … Fungal Minimal Draft Lower coverage short-read whole genome shotgun sequencing Assembly, annotation ( Mycocosm ) …

… to request the capabilities and expertise of both the Joint Genome Institute and the Molecular Foundry in one research … seeks research proposals that integrate genomics with nanoscale science, accelerating discoveries and developing … provides customized analysis, the JGI also participates in publication of results. Go here for additionial information, …

… DAN: Welcome back for episode 9 of Natural Prodcast. This week, Alison and I talk to Roger … products field as it relates to structure elucidation and genome mining, and how we might start to better connect … is likely to be in the environment? Can we use this broad-scale view of the chemistry in order to start to make …

… The central mission of the JGI’s Genomic Technologies department is   ensuring … .  Many users rely on a multifaceted combination of genomic, transcriptomic, proteomic, phenotypic, … metabolomic, imaging, sensor, and other data produced at scales amenable to statistical analysis. To meet these …

… the diversity of plants. To put this evolutionary timescale in perspective, the genus Aspergillus has been … Researchers with the Department of Energy (DOE) Joint Genome Institute (JGI)’s Fungal and Algal Science Program … Earth's fungal kingdom. The manuscript reviews about 200 publications linking evolutionary history and innovations …

… Menaka Wilhelm, who is the host of JGI’s other podcast, Genome Insider . If you’re a Genome Insider listener, then … a new investigator who wants to try out something smaller scale, or if you’re just curious to know more, then I really … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we …