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I think for Natural Prodcast, I think the question that generally comes up that people come to me asking like is– … to offer you. So there’s a lot of– we also have a lot of analysis pipelines, be it for, again, metagenome, … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we …

… my undergraduate in microbiology and then PhD in microbial genetics in the UK. And came across to the US for a couple … help the Society grow. And so I’ve been the chair of the publications committee for the last, what is it now, five … has led a vision for the JGI that sees secondary metabolism analysis and research as a driver for novel technologies …

… of it. So it wasn’t only chemistry or only biochemistry or genetics. It was also ecology. It was also evolution. It was … I think so. NADINE ZIEMERT: But we still had had only a few contexts, so it worked pretty well. DAN UDWARY: No, they … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all …

Chief Informatics Officer …

… to regulate Earth's carbon balance, to exploring the genetic basis of how plants have naturally adapted to varied … the accuracy of functional predictions and speed up genome analysis. Additionally, the Plant Program is advancing … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …

Science through high performance computing (HPC) and data analysis.  The DOE Systems Biology Knowledgebase ( KBase ) … the completion of a project, the JGI makes the assemblies, gene annotations, and analyses available to the community at … more customized analysis, the JGI also participates in publication of results. … Submission … More on Sequencing …

Dariia et al. (2023)  A standardized quantitative analysis strategy for stable isotope probing metagenomics … Ladau, J. et al. (2019)  Spatial, Temporal, and Phylogenetic Scales of Microbial Ecology . Trends Microbiol. … Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected Publications … For further details, please reach out to the …

Hey, Alison Takemura: Hey, Dan. Dan Udwary: Today we’re going to talk to Kate Duncan. And Kate is– I should ask, you … I was imagining some massive contraption for amplifying genes. I wasn’t really sure what actinobacteria were. Dan … is a whole bunch of information that maybe never makes its publication. And these are little tips, you know, how to …

… by the Biological and Environmental Research program, the Joint Genome Institute provides advanced genomic capabilities, … DNA design and synthesis, metabolomics and computational analysis that enable systems-based scientific approaches to … are at the core of many environmental processes, and the genetic makeup of microbial species and communities forms …

… the active site of an enzyme. So there is no promiscuity, generally speaking, in primary metabolism. Nevertheless, … function to a particular producing organism in the context of a clearly defined ecological interaction. So it’s … of natural product biosynthesis in bacteria ” The ActDES publication came out after we talked. It looks like a great …

The User Support Analysis group provides computational analysis for new technology development and JGI user science … We perform analysis for diverse experiment types, with main focus areas being genome variation, transcriptomics and …