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Institutional User Agreements
… Every approved proposal starts with a User Agreement — before any work can begin, … of sequencing data for synthesis. This agreement, required by the DOE for all work performed in its User Facilities, is … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …
Learn more
CSP Functional Genomics
… The CSP Functional Genomics call is to enable users to perform … ‘omics capabilities to enhance understanding of gene and genome function, particularly those not readily achievable … and analysis will be provided for free to the PI by the Department of Energy’s funding of the JGI. There is …
Learn more
FICUS-NERSC/KBASE
… The mission of the Joint Genome Institute is to serve the scientific community as a user facility pioneering functional genomics to solve the most … Science through high performance computing (HPC) and data analysis.  The DOE Systems Biology Knowledgebase ( KBase ) …
Learn more
FICUS Overview
… The Facilities Integrating Collaborations for User Science (FICUS) … A Letter of Intent is required. For accepted proposals, sequencing, synthesis, metabolomics and analysis will be provided for free to the PI by the Department of Energy’s funding of the JGI. There is …
Learn more
Natural Prodcast Episode 23: Aaron Puri
… DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right … And it actually was jumping onto the I ntegrated Microbial Genomes and Metagenomes, the IMG platform that JGI has that … really fun that you want to– a new area of your lab is exploring? AARON PURI: Yeah. Thanks. So– DAN: Almost like …
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Partnerships: Myco-Ed
… The Mycological Curriculum for Education and Discovery  (Myco-Ed) is … genomic resources empower students through isolation and genome sequencing of new fungal species.  Students collect fungi, … Beyond providing a scalable solution for production of high-quality fungal …
Learn more
Natural Prodcast Episode 7: Ben Shen
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … plant natural products, and what really fascinated me – the pinene – if you go to the forest, you have this very … from The Scripps Research Institute (TSRI) in Jupiter, Florida. Ben and Alison and I talk about enediynes and their …
Learn more
Natural Prodcast Episode 24: Jackie Winter and SMC
… DAN UDWARY: Hey, everyone! Welcome to the “Self Promotion Episode” of Natural Prodcast. A … Breaking Bad, I guess. But no, you trained me in how to genome mine, so thank you for that. And you had to put up … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever …
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Natural Prodcast Episode 16: Marcy Balunas
… DAN: Hey Marcy!  ALISON: Hey Marcy?  MARCY: Hello. How’s it going?  DAN: Good. … And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much … ALISON: Marcy, is that something that your lab is exploring?  MARCY: Mm-hmm, so this gets back to Dan’s …
Learn more
Community Science Program
… Science Program (CSP) provides the scientific community at large with access to high-throughput sequencing, synthesis, … Areas . Through this program, the DOE aims to advance genome science-based scientific research from a broad range … synthesis, metabolomics and analysis will be performed by the JGI at no cost to the user. …
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Biodesign
…   The Joint Genome Institute's Biodesign Platform capabilities support researchers exploring how to convert sequence into functional … Check out our organism-agnostic CRISPR gRNA design tool  … BOOST provides a suite of tools to automate sequence design for assembly by Gibson, Yeast …
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How to Submit Sequencing Samples
… Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on … 1) Review JGI sample QC requirements and protocols Obtaining DNA and RNA of … material is one of the greatest predictors of a successful sequencing project. It is imperative that users properly …
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