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Microbial Program
… analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … families, and pathways, enhancing our understanding of evolutionary diversification and microbial diversity. Learn … inferred host taxonomy, conjugation potential, antibiotic resistance genes, and ecosystem information. … The IMG/VR …
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Natural Prodcast Episode 16: Marcy Balunas
… know that that’s ever necessarily like a good description of anyone because chemistry means a lot, especially when … And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much … was episode 6.] about this. And really his focus was on the evolution of these systems and I understand you’ve worked on …
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Natural Prodcast Episode 18: A CSP Primer
… while, but Natural Prodcast is back again for another round of episodes. If you stick around for the next few months, … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we … If you have questions about appropriateness of projects or experimental design, you’re invited to contact Tanja …
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Natural Prodcast Episode 11: Marnix Medema
… … Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … by was that the project was a mixture, initially, of experimental and computational work. And that it involves … in more detail. Especially if you want to look at the evolution of these gene clusters, for example, you really …
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Metabolomics
… functional genome annotation, improves understanding of the role small molecules play in diverse biological … systems, sheds light on nutrient cycling, and leads to the discovery of new molecules and pathways. The JGI … are generated for metabolites extracted from a variety of experimental samples, including organisms (e.g. microbes, …
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Secondary Metabolites Program
Secondary Metabolites Program focuses on the exploration of secondary metabolites across bacteria, fungi, algae and … for fundamental growth, provide critical advantages to the organisms producing them, and are often involved in … and data for deciphering regulatory networks, and refining experimental approaches to explore the synthesis and …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… for thousands of years, but we’d like to start comparing evolution in real time to maybe like hypersaline … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever … that have been affiliated or– there’s been some kind of experimental analysis that can correlate those clusters to a …
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Products
Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of … as well as target cycle times from sample receipt to completion of standard analysis.  Raw data is provided … For custom requests not on this list, or to discuss experimental design for a proposal, we encourage you to …
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How to Submit Sequencing Samples
Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI. … sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality has been the rate-limiting …
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JGI@25
Celebrating 25 years of genomics research 2022 marked the JGI’s 25th anniversary. We revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy and …
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Transcriptomic and genomic effects of gamma-radiation exposure on strains of the black yeast Exophiala dermatitidis evolved to display increased ionizing radiation resistance
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DOE Metrics
FY 2025 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal Actual Total* Actual % of Goal Goal (hours)** Actual Total Actual % Goal FY 2025 … [Download PDF] Q2 – Report on progress developing new experimental capabilities to analyze complex genomic or …
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