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Microbiome Data Science Team
… and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … advances in management, processing and visualization of “big data,” and artificial Intelligent/machine learning … breakthrough discoveries and catalyzing a major transition of biology into data science.  Research in the Kyrpides …
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FICUS Overview
… for User Science (FICUS) initiative was established in 2014 to encourage and enable researchers to more easily integrate the expertise and capabilities of multiple Department of Energy Office of Science National … provides customized analysis, the JGI also participates in publication of results. …
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Micro-Scale Applications Group
… Micro-Scale Applications group explores the genetic makeup of natural microbial communities using a variety of cutting-edge approaches.  Our group also seeks out new … the quality of single-cell genomes and directly link functional information with individual cells. Research Team  …
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FICUS-NERSC/KBASE
… The mission of the Joint Genome Institute is to serve the scientific community as a user facility pioneering functional genomics to solve the most relevant bioenergy and environmental problems.  The mission of the National Energy Research Scientific Computing Center …
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Natural Prodcast Episode 12: Nadine Ziemert
… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … just be within the chemists or just be within a group of evolutionary ecologists or something, so I think then you … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all …
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On the origin and evolutionary consequences of gene body DNA methylation
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How to Submit Sequencing Samples
… Below is a brief description of the process needed to prepare and ship samples for … sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality has been the rate-limiting … Weight DNA extraction and quality control (from PacBio) 2) Review guidelines detailing quantity and quality …
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Plant Program
… to current problems facing humanity. A major focus are biofuel feedstock species and plant-microbe interactions, … a plant based bioeconomy where plants are a major source of chemical production and contribute to a healthier planet … and protein folding models, to improve the accuracy of functional predictions and speed up genome analysis. …
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Natural Prodcast Episode 22: Alison Narayan
… Welcome back to Natural Prodcast. This continues the series of interviews we recorded at the Society for Industrial … did it all begin? DAN UDWARY: Yeah, I love to hear people’s origin stories. ALISON NARAYAN: For me, the initial … interesting. ALISON NARAYAN: It is a result that has a functional benefit for us, being chemists working with …
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Natural Prodcast Episode 18: A CSP Primer
… to find info about the CSP, FICUS, New Investigator and Functional Genomics calls. For my audience, all of these … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we … metabolism, I find, is that even though it may not be the original intent in the proposal depending on what sample …
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JGI@25
… Celebrating 25 years of genomics research 2022 marked the JGI’s 25th anniversary. We revisited a number of notable achievements that showcase our collaborations and …
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Mining New Frontiers: The Critical Minerals and Materials Joint Call
… for researchers to request the capabilities and expertise of both national user facilities in one research proposal.  … challenges in the sourcing, recovery, and utilization of critical minerals and materials. The proposal submission deadline is March 31, 2026 .  …
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