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Environmental Genomics Group
… develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … Spatial, Temporal, and Phylogenetic Scales of Microbial Ecology . Trends Microbiol. 10.1016/j.tim.2019.03.003 … Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected Publications … For further details, please reach out to the …
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Microbial Program
The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … around the world. … Integrated Microbial Genomes and Microbiomes … Integrated Microbial Genomes — Plasmid …
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Natural Prodcast Episode 11: Marnix Medema
… … Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s … a group of Jos Raaijmakers at the Netherlands Institute of Ecology and Victor Carrion who was the postdoc leading that …
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Institutional User Agreements
… starts with a User Agreement — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …
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Data Ecosystem
To expand access to integrated data, improve tools and infrastructure as well as … cohesive data standards, the JGI partners with a number of facilities.  … Through its partnership with NERSC and the … will be the development of tools and infrastructure for microbiome data science, and the development of new …
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Partnerships: Myco-Ed
Undergraduate Research Experience (CURE) that consists of coordinated hands-on experiments across fungal biology … partnered with the Arizona Genomics Institute where high molecular weight DNA is extracted from samples, which is … biological inference and understanding of fungal diversity, ecology, and potential applications. … The Department of …
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Who We Are
…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility … as the DOE Systems Biology Knowledgebase and the National Microbiome Data Collective.        … Learn more about our …
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Targeted metagenomics and ecology of globally important uncultured eukaryotic phytoplankton
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What Happens Underground Influences Global Nutrient Cycles
… 2020 collaborative FICUS projects. Through the Facilities Integrating Collaborations for User Science (FICUS) program, two Department of Energy (DOE) Office of Science national user facilities—the  Environmental Molecular Sciences Laboratory (EMSL) and the  DOE Joint …
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Natural Prodcast Episode 8: Eric Schmidt
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … you’d like to read more about this, I highly recommend his publication last year, “The Biosynthetic Diversity of the …
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Secondary Metabolites Program
Secondary Metabolites Program focuses on the exploration of secondary metabolites across bacteria, fungi, algae and … growth, provide critical advantages to the organisms producing them, and are often involved in defense, nutrient … agriculture. … The Secondary Metabolites Program targets the vast and underexplored reservoir of secondary …
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DNA Synthesis Program
The JGI’s DNA Synthesis Program supports a wide range of projects, from single-gene synthesis to the synthesis of entire chromosomes, … focusing on developing genetic systems that can address global energy and environmental challenges. The program …
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