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Natural Prodcast Episode 22: Alison Narayan
… the series of interviews we recorded at the Society for Industrial Microbiology and Biotechnology (SIMB) Natural … project to explore the chemical capabilities of flavin monooxygenases, and more broadly about the field of biocatalysis … made it onto our list is because we wanted to have diversity. And so we wanted a profile across that protein …
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Single Cell Research Group
… material of uncultivated taxa of interest. One such effort is targeted at environmental cells that are from … in 1985, which highlights our skewed understanding of microbial metabolism towards a minority of cultivated … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …
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Natural Prodcast Episode 13: Francisco Barona Goméz
Mexico, and an incredibly bright guy who’s been thinking for a long time about the evolution and natural products … UGA-Langebio in Irapuato, Mexico. His interests are in microbial diversity and evolution, particularly as how … of natural product biosynthesis in bacteria ” The ActDES publication came out after we talked. It looks like a great …
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FICUS Overview
The Facilities Integrating Collaborations for User Science (FICUS) initiative was established in 2014 … aims to encourage innovative research exploiting a diversity of capabilities. Previously, researchers had to … provides customized analysis, the JGI also participates in publication of results. … All proposals undergo technical …
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Natural Prodcast Episode 8: Eric Schmidt
… of secondary metabolism.  DAN: Hey there and welcome back for Episode 8 of Natural Prodcast. This week, we have our … with animal metabolism itself, and it’s really amazing what diversity there is in animals. I think, even despite the … you’d like to read more about this, I highly recommend his publication last year, “The Biosynthetic Diversity of the …
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Natural Prodcast Episode 1: The Primer, Part 1
Takemura, whose voice you’ll hear in a minute – we work for the US Department of Energy Joint Genome Institute, or … of the field. Then, in the third episode, we’ll discuss the modern history of  natural products and where we are today. … right. So I did a PhD in microbiology at MIT, and I studied microbial ecology. I studied Vibrio species in the ocean, so …
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Products
… to completion of standard analysis.  Raw data is provided for all sequencing products below. In addition, JGI will … to the  MassIVE repository . Not all products are available for all proposal calls.   Please review the call language … physical separation of a biologically relevant unit from a microbial community, such as a microcolony, microbial …
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Plant-Microbial Interactions Group
… including fungal and bacterial symbionts, detrimental microbial pathogens, and associated viruses that all … experimental characterization methods, in addition to bioinformatics tools to elucidate phage function in this … of plant/environmental responses … Selected Publications … Research Team Alumni … For further details, …
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How to Submit Sequencing Samples
… of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes … [email protected] . … 1) Review JGI sample QC requirements and protocols Obtaining DNA and RNA of suitable … PacBio) 2) Review guidelines detailing quantity and quality requirements Please review the appropriate guidelines …
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Natural Prodcast Episode 7: Ben Shen
… of secondary metabolism.  DAN: Hello, and welcome back for Episode 7 of the Natural Prodcast. It’s been about a … genomic revolution, to me, as a natural part chemist for microbial natural product, is that I love microbial natural … and it’s equivalent to translating all these books into a modern language that everybody can read. So now, if you …
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Metabolomics Program
… exploration of energy and nutrient exchange, as well as microbial and plant responses to environmental changes. With … biogeochemical processes, development of high performance plants and microbes, and understanding microbiome interactions. The  insights derived are crucial for advancing the bioeconomy, environmental sustainability, …
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Taking Stock of the Known and Unknown Microbial Space
Metagenomic datasets could help map out microbial diversity hotspots Over the past few decades, advancements … the microbial diversity we know about, and proposes a path forward to curate and cultivate what is still unknown.  “We …
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