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FICUS-NERSC/KBASE
The mission of the Joint Genome Institute is to serve the scientific community as a … … For sequencing projects, once work is under way, raw sequence data is released to NCBI’s Sequence Read Archive on … more customized analysis, the JGI also participates in publication of results. … Submission … More on Sequencing …
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JGI Portals
… of our users. … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to … of microbial communities based on their metagenome sequence, in the context of reference isolate genomes … novelties and expansions.  … The SMC provides complete sequence and annotation data for secondary …
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Frequently Asked Questions: Proposal Submission
… proposals are subject to JGI policies on Data Release and Publication .   Except for applicants to the CSP New … on our YouTube channel as well as in this episode of our Genome Insider podcast.  You can also contact … There is no cost to the user and no granting of funds. … A complete listing of approved proposals can be found …
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Natural Prodcast Episode 14: Nigel Mouncey
… off today with my interview with the Director of the Joint Genome Institute and head of the Secondary Metabolites … that’s your turf.  NIGEL MOUNCEY: Yeah, great.  DAN: And completely free, right?  NIGEL MOUNCEY: It is completely … help the Society grow. And so I’ve been the chair of the publications committee for the last, what is it now, five …
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Genome sequence of the mud-dwelling archaeon Methanoplanus limicola type strain (DSM 2279T), reclassification of Methanoplanus petrolearius as Methanolacinia petrolearia and emended descriptions of the genera Methanoplanus and Methanolacinia
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New Lineages of Life Group
… structure and biogeochemical cycles. Research Team    … A complete publication list available at Google Scholar. Schulz, C … (2022) Giant virus biology and diversity in the era of genome-resolved metagenomics. Nature Reviews Microbiology …
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IMG Group
… data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research Team    … The … nearly 18% of all existing species. Additionally, the complete linkage clustering made it possible to confidently … distribution of microbial genome and microbiome datasets sequenced at the JGI. IMG/M is also open to scientists …
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Secondary Metabolites Program
… factors and determine their binding sites across multiple genomes. Computational prediction of heterologous … computational analyses of BGC size and complexity, BGC sequence composition, metabolic similarity & compatibility, … signatures of horizontal gene transfer. … The SMC provides complete sequence and annotation data for secondary …
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Complete genome sequence of Spirochaeta smaragdinae type strain (SEBR 4228T)
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Natural Prodcast Episode 13: Francisco Barona Goméz
UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast– a podcast about natural … If we are only interested in that final product, which is completely potent and specific to the target we’re thinking … of natural product biosynthesis in bacteria ” The ActDES publication came out after we talked. It looks like a great …
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Offerings & Capabilities
The central mission of the JGI’s Genomic Technologies department is   ensuring … through end-to-end automation, and further advancing sequence applications, single cell genomics, DNA synthesis, and metabolomics.   … Deputy of Genomic Technologies …
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Environmental Genomics Group
Research in the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify and … develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected Publications … For further details, please reach out to the …
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