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… DAN: Hey, everybody. Welcome back for another episode of … in terms of their natural products chemistry, and he has a project with the JGI to synthesize the genes for and explore … And it actually was jumping onto the I ntegrated Microbial Genomes and Metagenomes, the IMG platform that JGI has that …

… DAN: You’re listening to the US Department of Energy Joint … benefits. DAN: Now, you and I are working together on a project at the JGI to try to find new enediyne clusters and … Episode Transcript … and our collaborations to sequence that collection, mine genomes, and develop new technology to access natural …

… The JGI’s data stewardship expertise and infrastructure enable a broad … new algorithms, models and tools in support of DOE mission priorities. Data discoverability and accessibility are … July 22–July 24 for computing upgrades . We regret any inconvenience. Effective July 27, 2026, the JGI will move to a …

… The mission of the Joint Genome Institute is to serve the scientific community as a user facility pioneering functional genomics to solve … and readiness to begin work, checking such factors as genome size, polymorphism level, sample quality and … to DOE for final approval.  Following DOE approval, project managers negotiate project specifics with PIs …

… The Joint Genome Institute and the Molecular Foundry have launched a joint Critical … to request the capabilities and expertise of both national user facilities in one research proposal.  Submit … free of charge, including data such as fully annotated genome assemblies or differential gene expression results. …

… The Facilities Integrating Collaborations for User Science (FICUS) initiative was established in … and multidisciplinary nature of DOE mission science projects, this initiative aims to encourage innovative … provides customized analysis, the JGI also participates in publication of results. …

… Microbes drive critical ecosystem functions and affect global nutrient cycling, however they do so under … While an ever-increasing number of phage and virus genomes have … Multiomics approaches such as metagenomics and metatranscriptomics provide invaluable information on virus diversity and activity in microbial communities, …

… Breaking Bad, I guess. But no, you trained me in how to genome mine, so thank you for that. And you had to put up … DAN UDWARY: Nothing to be sorry about. Yeah, no, your project was really cool. The vanadium haloperoxidases are … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever …

… Menaka Wilhelm, who is the host of JGI’s other podcast, Genome Insider . If you’re a Genome Insider listener, then … is kind of like a CSP, but you would be proposing a larger project that requires the work of two or more DOE user … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we …

… The JGI’s Metabolomics Program works to uncover the roles of small … them with genomic data to enhance our understanding of genome science, organisms, and ecosystems at the molecular … metabolites, genes, and proteins. It also enables exploration of energy and nutrient exchange, as well as microbial and …

… The Mycological Curriculum for Education and Discovery  (Myco-Ed) is a … genomic resources empower students through isolation and genome sequencing of new fungal species.  Students collect … links below. Naturalist Myco Ed Fungal Genomics Education Project MycoCosm MycoEd group page Protocols, teaching …

… The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library preparation, Biodesign and pathway engineering Mass spectrometry … Fungal Minimal Draft Lower coverage short-read whole genome shotgun sequencing Assembly, annotation ( Mycocosm ) …