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FICUS-NERSC/KBASE
… discovery at the DOE Office of Science through high performance computing (HPC) and data analysis.  The DOE Systems Biology Knowledgebase ( KBase ) integrates systems biology data and tools to help predict biological function.   To jointly … The researcher then submits a proposal for consideration in the next review cycle. All proposals …
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Bioinformatics Analysis Tools for Studying Microbiomes at the DOE Joint Genome Institute
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Plant Program
… With collaborative user projects, the JGI’s Plant Program delves into the … to environmental changes. The program lays the groundwork for sustainable solutions to current problems facing … species and plant-microbe interactions, advancing efforts to create renewable energy sources and bolster …
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Natural Prodcast Episode 18: A CSP Primer
… to offer you. So there’s a lot of– we also have a lot of analysis pipelines, be it for, again, metagenome, … data, do they have the resources and expertise to do the bioinformatics and to synthesize these results into publication? So there’s this really important because we …
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Natural Prodcast Episode 14: Nigel Mouncey
… DAN: Hello, everyone, and Welcome back for Episode 14 of Natural Prodcast . There’s been a lot … using these together along with all of our computational tools to really build out much more of an integrative … help the Society grow. And so I’ve been the chair of the publications committee for the last, what is it now, five …
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Fungal & Algal Program
… vast diversity of fungi and algae to unlock their potential for bioenergy, environmental sustainability, and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the biological mechanisms that enable fungi and algae …
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User Support Analysis Group
… The User Support Analysis group provides computational analysis for new technology development and JGI user science …
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Secondary Metabolites Program
… JGI’s Secondary Metabolites Program focuses on the exploration of secondary metabolites across bacteria, fungi, algae and plants. These molecules, which are not essential for fundamental growth, provide critical advantages to the … in defense, nutrient acquisition and communication. Studying how these compounds are biosynthesized and their …
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Biodesign
…   The Joint Genome Institute's Biodesign Platform capabilities support researchers exploring how to … group and focused on new technologies and optimizing tools — including strain engineering — to make them more … and novel automations for DNA design, assembly and analysis Overview of biodesign products The JGI Biodesign …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… to the Department of Energy Joint Genome Institute’s Natural Prodcast– a podcast about natural products and the … Mexico, and an incredibly bright guy who’s been thinking for a long time about the evolution and natural products … I have the feeling that once we have the synthetic biology tools, we finally are in a position to exploit secondary …
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Special Initiatives & Programs
… sequencing, synthesis, and targeted metabolomics support for DOE-BER funded awards, including awards funded through  BER … and products . A minimum request of 1 Tb of sequence data is required to qualify for BERSS. For DNA synthesis … Collection Network (USCCN) to nominate their strains for sequencing, as long as they have a scientific question …
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JGI Portals
… The JGI’s data stewardship expertise and infrastructure enable a broad … to leverage our data to develop new algorithms, models and tools in support of DOE mission priorities. Data … discoverability and accessibility are critical requirements for amplifying the JGI’s impact. Data generated from a …
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