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Natural Prodcast Episode 13: Francisco Barona Goméz
… Mexico, and an incredibly bright guy who’s been thinking for a long time about the evolution and natural products … work like ActDES, which is a curated database of actinobacteria for evolutionary studies, and hopefully we can … could be a reasonable number if you are talking about a plant and a microbe interacting very stably. So it makes …
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Mining New Frontiers: The Critical Minerals and Materials Joint Call
… proposal call . This represents a unique opportunity for researchers to request the capabilities and expertise of … science, accelerating discoveries and developing transformative bio-based technologies that address challenges in … capabilities, they then ship samples—such as DNA and RNA for sequencing—to JGI. Users are responsible for covering …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… Bacterial enzymes play second fiddle to those from fungi when it comes to breaking down tough plant fibers. The Science Walk in a temperate forest filled with Norway spruce trees, and microbial … Republic (LTT17022). A portion of this research was per- formed under the Facilities Integrating Collaborations for …
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Natural Prodcast Episode 7: Ben Shen
… of secondary metabolism.  DAN: Hello, and welcome back for Episode 7 of the Natural Prodcast. It’s been about a … origin is around 30,000 from fungal, and a 40,000 from bacteria. Okay? And among the 40,000 from bacteria, there’s … product chemistry? BEN:  Yeah. So, I was trained as a plant natural product chemist. When I first started in …
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Special Initiatives & Programs
… sequencing, synthesis, and targeted metabolomics support for DOE-BER funded awards, including awards funded through  … in the BER funding call, proposals are NOT eligible for BERSS support through the JGI (with the exceptions of … DE-FOA-0003453 and DE-FOA-0003615 , which are both eligible for BERSS). Available Resources All JGI products are …
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Metabolomics Program
… of energy and nutrient exchange, as well as microbial and plant responses to environmental changes. With advanced mass … biogeochemical processes, development of high performance plants and microbes, and understanding microbiome … to gain insights into how small molecules function within plants, microbes, and ecosystems. Identifying and analyzing …
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Natural Prodcast Episode 23: Aaron Puri
… DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m … colleagues. Aaron is doing some cool stuff with cool bacteria that I’m fascinated to learn more about. He works … DAN: Almost like you know that there is. AARON PURI: It’s a planted question Dan. Yeah. So overall I think what we’re …
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Natural Prodcast Episode 1: The Primer, Part 1
… Takemura, whose voice you’ll hear in a minute – we work for the US Department of Energy Joint Genome Institute, or … the special, natural chemical compounds that you find in plants, fungi and bacteria, basically all living things. When your crazy Aunt …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… the evolutionary past may hold key insights. The way that plants process nutrients has a rich back story — they rely on enzymes that have been evolving for billions of years. However, these enzymes are often … our focus on all the kingdoms, including animals, plants, bacteria, archaea and fungi. We thought this kind of …
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Natural Prodcast Episode 11: Marnix Medema
… genome miners use, including antiSMASH, MIBiG, and newer efforts, like BiG-scape and BiG-SLiCE, and now the BiG-FAM … on synthetic biology of engineering gene expression in bacteria – however, the professor was actually quite … called “disease suppression”, where the microbiome of a plant, so the bacteria living on and inside the roots are …
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Natural Prodcast Episode 6: Marc Chevrette
… Marc was the Head of Experimental Genomics there, before he decided to leave for graduate school and pursue his … As a host, and a little bit of my newer work is focused on plants, but in both cases, you know, these molecules are how … So, one of those is Acinetibacter . This is a genus of bacteria that’s really popped up at funding agencies and the …
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Fungal and plant gene expression in the Tulasnella calospora–Serapias vomeracea symbiosis provides clues about nitrogen pathways in orchid mycorrhizas
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