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Synthetic Biology Open Language (SBOL) Version 2.3
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Draft genome sequence of marine alphaproteobacterial strain HIMB11, the first cultivated representative of a unique lineage within the Roseobacter clade possessing an unusually small genome
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Rex Malmstrom
Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ growth rates and carbon consumption of SAR11 bacteria, the most abundant bacterial group in the ocean. … symbiosis. Nature Plants 10, 673–688 Vyshenska et al. 2023. A standardized quantitative analysis strategy for stable …
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A comparative genomics study of 23 Aspergillus species from section Flavi
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Natural Prodcast Episode 7: Ben Shen
… right? BEN: Yeah, yeah. Well, we are at [10 to the] minus 12 [Molar concentration]- is sufficient to kill cells. So … company Wyeth that introduced enediynes to the market in 2001 with a drug called Mylotag. Wyeth was later acquired by … So I wanted to ask you also about – because you were in the news recently – TSRI has acquired the Pfizer strain …
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Natural Prodcast Episode 14: Nigel Mouncey
… never forced it on me, but we always had these scientific news magazines lying around at home. And I would just pick … screening platform where we’d look at 10,000, 15,000, 20,000 mutants a week. We started doing a whole bunch of … looking at emails and I just saw this pop up. And saw a C&E News job little box and I thought, wow, this would be …
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Streamlining Regulon Identification in Bacteria
… sequencing, they were able to identify the target genes of 11 sigma factors in Streptomyces coelicolor . The Impact As … efficacy of RIViT-seq, researchers recently characterized 12 sigma factors and were able to identify the associated … Energy Office of Science under Contract No. DE-AC02-05CH11231 …
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Finding the Fermenters
National Institute of Food and Agriculture grant 2018-67015-27495, the United States Department of Agriculture National … genome on KBase … Narrative for Porphyromonadaceae sp. W3.11 genome on KBase … The phenotype and genotype of …
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Natural Prodcast Episode 17: Cassandra Quave
… the convention went– since the protocol went into force in 2014. There’s now a website that has a lot of resources that … then my lab pleaded mercy, and I said, OK, we’ll just do 2011 to present day. And it was still like 4,000 articles we … plants and bringing them back is not your jam, the good news is there’s this amazing resource that can be provided …
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Natural Prodcast Episode 6: Marc Chevrette
… project by watching Amanda Hurley’s presentation from the 2019 JGI Genomics of Energy & Environment Meeting.] He’s … have no extra genes hanging around, they still dedicate 20-30% of their genome to secondary metabolism. So it’s very … that’s really popped up at funding agencies and the popular news recently because a lot of soldiers in the Iraq and …
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Natural Prodcast Episode 12: Nadine Ziemert
… secondary metabolism. Welcome back. This will be episode 12 of Natural Prodcast. And it’s our conversation with Nadine … Europe. So if there are any kind of dated references to the news, that’s why. But it was a really fun conversation. And I think you’ll enjoy it. So here it is, episode 12 with Nadine Ziemert. DAN UDWARY: Hey, Alison. ALISON …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… in these gaps of knowledge. In a study published November 11, 2022, in Cell Genomics , the team focused on Actinobacteria ( …
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