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Synthetic Biology Informatics Group
… which track samples through the JGI’s Synthetic Biology pipeline as well as provide process automation support …
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Natural Prodcast Episode 14: Nigel Mouncey
… work to link all this together and try to build a seamless pipeline that takes us through these different capabilities. …
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Supporting community annotation and user collaboration in the integrated microbial genomes (IMG) system
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Gene Context Analysis in the Integrated Microbial Genomes (IMG) Data Management System
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Plant Program
… Plant Flagship Genomes are selected through discussion with the JGI Plant … Advisory Committee and DOE, designating a set of JGI plant genomes that are the most important to DOE mission and plant … datasets to further gene function research. The  Open Green Genomes (OGG) project seeks to develop comparative high …
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Natural Prodcast Episode 16: Marcy Balunas
… almost never Actinomycetes. And so when we look at their genomes we don’t get the same kind of information that we … find those things somewhere else out and all the different genomes and also in the chemistry.  MARCY: We isolated …
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New Lineages of Life Group
… discovering and characterizing giant viruses, which possess genomes and particle sizes that rival those of cellular … Conservative taxonomy and quality assessment of giant virus genomes with GVClass. ”  npj Viruses, Volume 2 Article 60. … easy construction of phylogenetic trees from user-provided genomes and phylogenetic markers. …
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The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions
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Microbial Program
… catalog : Beyond minimal draft and improved draft microbial genomes the program offers single-cell sequencing, … Expansion of sequence space:  The JGI generates reference genomes from diverse bacterial and archaeal lineages to … analysis and annotation of all publicly available genomes from three domains of life. It provides tools for …
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Finding the Fermenters
… browser that allows other researchers to study the genomes and predict the metabolic abilities of these … from the literature. They then used the JGI’s GOLD and IMG data portals to get information about the genomes and genes of the organisms on the list. They also …
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Natural Prodcast Episode 18: A CSP Primer
… for you, we sequenced thousands for you or thousands metagenomes. And I think also the quality that we provide. So … you. So there’s a lot of– we also have a lot of analysis pipelines, be it for, again, metagenome, metatranscriptomes … is over, the data gets released on our portals, such as IMGM. But we also then push the data to GenBank. So the raw …
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Metabolomics Program
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