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… a podcast about the science and scientists of secondary metabolism.  DAN: Hey there, and welcome to the first … right. So I did a PhD in microbiology at MIT, and I studied microbial ecology. I studied Vibrio species in the ocean, so … We’re looking at a schematic of different pathways in a microbial cell, it looks like. It could be a eukaryotic …

… physical separation of a biologically relevant unit from a microbial community, such as a microcolony, microbial aggregate, or a specific subset of free-living … sample, annotation ( IMG/M ), binning Depends on project Microbial Minimal Draft, Isolate Draft quality microbial …

… exploration of energy and nutrient exchange, as well as microbial and plant responses to environmental changes. With … enzymatic transformations, pathways, and how changes in metabolism can affect ecosystem functions. The Metabolomics … systems can provide novel insights into the impact of microbial symbionts and their hosts on ecosystems.   …

… chairs and I talk about SMC – which is the new Secondary Metabolism Collaboratory data portal I’ve been working on … are familiar with JGI’s IMG data portal , the Integrated Microbial Genomics, there was a subsection of that called … and they used that on all of IMG’s genomes. But IMG is microbial genomes — mostly bacteria and archaea. And we knew …

… genetic microdiversity or core metabolic flexibility? … Microbial contributions to soil carbon storage during …

… tell us about this squid-microbe relationship. Or is it a microbial community with microbial community relationship?  … think might be happening, we’re sort of converging on this model of this being called an egg defense model. And so … transfer. And so it’s beneficial then to have secondary metabolism in proximity within the genome so that things can …

… a podcast about the science and scientists of secondary metabolism.  DAN: Welcome back to Natural Prodcast! This is … more interested just to see if we can use Aspergillus as a model for expressing hard to work with eukaryote [genes]. So … the climate change that’s occurring. There’s been a lot of modeling of mycotoxins, aflatoxin in particular, and it’s …

A global metagenomic map of urban microbiomes and antimicrobial resistance. Cell . 184(13):3376-3393 Almeida A, et … et al. (2016) Microbiome Data Science: Understanding Our Microbial Planet. Trends Microbiol. 24(6):425-7. … uncovers gaps in amplicon-based detection of microbial diversity.  Nature Microbiol .  15032 Eloe-Fadrosh …

… and met local wildlife (a marmot!) as they’ve sampled the microbial communities living in the mountaintop lakes of the …