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… computational analysis for new technology development and JGI user science projects. We perform analysis for diverse experiment types, with main focus areas being genome variation, transcriptomics and epigenomics. Our work varies in scope from the development of …

…   The JGI’s Secondary Metabolites Program focuses on the … growth, provide critical advantages to the organisms producing them, and are often involved in defense, nutrient acquisition and communication. …

… and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data Policy. It is our … is publicly visible and available in JGI systems. Users not involved with the proposal under which the data were …

To expand access to integrated data, improve tools and infrastructure as well as ensure cohesive data standards, the JGI partners with a number of facilities.  … Through its … KBase are designated DOE Office of Science Public Reusable Research (PuRe) Data Resources are authoritative providers …

… … Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s … and secondary metabolism over the last decade or so. He’s involved with a lot of the common tools that genome miners … of question have you applied them? Dan Udwary: Well, at JGI we have the Atlas of Biosynthetic Clusters . And this is …

… the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on accessing … of Sample QC Sample Quality and Contamination JGI’s Genomic DNA Sample QC Protocol JGI’s Total RNA Sample QC …

With collaborative user projects, the JGI’s Plant Program delves into the natural world’s potential to address global … and anti-pest compounds.  The program is working to expand genomic resources for key plant species, enhancing our …

… fantastic diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental … are influenced by microbial partners. We use a variety of genomics-powered tools to study this complexity, including … 10.1371/journal.pbio.2002860 … Postdocs: Margot Bezrutczyk (JGI Postdoc) Lamprinos Frantzeskakis (JGI Postdoc) Interns: …

The JGI aims to inspire more students to enter the STEM workforce by … of our role in advancing the energy and environmental genomics research frontier.  Learn more about the JGI's activities in …

Biology is currently experiencing a revolution brought on by rapid developments in genomics and other omics technologies.  The exponential … a major transition of biology into data science.  Research in the Kyrpides group focuses on Microbiome Data …

… … DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s … in Germany. Like me, she’s a genome miner and has been involved with the AntiSMASH and MIBiG projects. And I found … was fascinating, I think. DAN UDWARY: Yeah, and that was a JGI Community Sequencing Project. You’re right, yeah. NADINE …

The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their … Metagenome Program combines large-scale, time-series metagenomic data with detailed characterization of model systems … viral populations. Enabling microbiome data science:  The JGI supports microbiome data science by enabling comparative …