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… first genome sequence with you. Brad: That’s right,  Dan: JGI did it in fact. Brad: That was a magical project I … had experienced the largest bloom ever observed on planet Earth. This was the 2015 Pseudonichia diatom bloom. It made … that Merck has, that was published in Science just a few months ago, where Merck scientists and Codexis scientists …

… round of episodes. If you stick around for the next few months, you’re going to hear my last interview with my co-host Alison Takemura, who’s moved on from JGI to do real journalism, and we wish her all the best. … where smaller proposals may be a fit. Still not 20 many microbes. We still we work in plates, right? We’re a high …

Microbes drive critical ecosystem functions and affect … revealed as pervasive in bacteria and archaea across Earth’s biomes. Nature Microbiology. 4 , 1895–1906 Roux, S. …

… and head of the Secondary Metabolites Science Program at JGI, and also my boss, Nigel Mouncey. I got him on to talk … slides that float around here, there is a term called “Earth’s Secondary Metabolome.” Do you want to explain to … But they really span our core science programs which are microbes, and fungi, and algae plants, synthetic biology. …

The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located at Lawrence Berkeley National Laboratory. The JGI consists of around 280 researchers and support staff in … Data Collective.        … Learn more about our work at the JGI:  …

… advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … drive innovations that could advance our understanding of Earth’s ecosystems. … The Metagenome Program focuses on the … viral populations. Enabling microbiome data science:  The JGI supports microbiome data science by enabling comparative …

JGI is in the process of shifting its operations from Walnut … labs in Building 100 were silent. Twenty years after the JGI united the genomics expertise of three national labs in … deciding on what was essential. There were multiple waste streams to consider, including unneeded chemicals, unopened …

… products categorized by Science Program.  … The majority of JGI projects come from the user community. Find out about JGI’s calls for proposals , and submit your proposal online … be accessed via the Genome Portal , at the following sites: Microbes: IMG (citation: https://doi.org/10.1093/nar/gkaa939 …

The JGI’s Microbial Program focuses on using cutting-edge … techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … and epigenomics. Expansion of sequence space:  The JGI generates reference genomes from diverse bacterial and …

In honor of the JGI's 25th anniversary in 2022, we have revisited a number … come from livestock — specifically, from the methane-making microbes within their rumen. There is another climate-minded … well as efficient engineering of biofuels. Since 2010, the JGI has partnered with researchers around the world to map …

… be paid for by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds. … who have not been a PI on any approved proposal with the JGI Investigators interested in translating genomic … individual calls and other opportunities to work with the JGI … User Support …

… diversity of alternative genetic codes (Science 2014), unearthing hundreds of thousands of new viral genomes and … and massive reconstruction of genomes from uncultivated microbes (Nature 2019). Other projects in the group include … Nayfach S, et al. (2021) A genomic catalog of Earth’s microbiomes. Nature Biotechnol . 39(4):499-509. …