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Natural Prodcast Episode 11: Marnix Medema
… … Dan Udwary: You’re listening to the Department of Energy Joint Genome … of question have you applied them? Dan Udwary: Well, at JGI we have the Atlas of Biosynthetic Clusters . And this is … we started prioritizing, OK, which gene clusters are more highly abundant in the suppressive soils compared to the …
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Natural Prodcast Episode 15: Katherine Duncan
… in Antarctica on a ship. Yeah, so I went to Antarctica in 2018 as a participant in Homeward Bound 2, last year as … looked at chemical profiles generated using these highly sensitive instruments, we had to try and figure out … you have a question, or want to give us feedback, tweet us @JGI or to me @danudwary. That’s D-A-N U-D-W-A-R-Y. If you …
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Natural Prodcast Episode 5: Brad Moore
… … DAN: You’re listening to the US Department of Energy Joint Genome … first genome sequence with you. Brad: That’s right,  Dan: JGI did it in fact. Brad: That was a magical project I … and being able to do those predictions. So we’re pretty excited about where these next few years are gonna take us. …
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Special Initiatives & Programs
Overview The JGI provides sequencing, synthesis, and targeted … the JGI’s  calls for user proposals . … The JGI is inviting researchers using the U.S. Culture Collection Network … will develop fuels and products by integrating three highly interconnected DOE priority areas of Feedstock …
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Frequently Asked Questions: Project Management
… products categorized by Science Program.  … The majority of JGI projects come from the user community. Find out about JGI’s calls for proposals , and submit your proposal online … for DNA sequencing. … No. However, the JGI does maintain a list of protocols, found in our HERE (TK) , used …
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Partnerships Development Team
… was established in part to help better-connect industry to JGI resources, as well as target academic, governmental and … institutions who haven't yet partnered with the JGI. The Business Development Team works closely with the … to high-throughput sequencing and other resources at the JGI for projects of relevance to Department of Energy …
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Products
The JGI has diverse capabilities in: DNA and RNA sequencing, … is provided for all sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the … outputs for each product. For custom requests not on this list, or to discuss experimental design for a proposal, we …
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Data Policy
… the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data Policy. It is our … of data to support their use by those generating data. The JGI Data Policy applies to research data and analysis … of the data at outside repositories),  (2) PI request to list data publicly, (3) at the end of the embargo period. If …
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FICUS Overview
… initiative was established in 2014 to encourage and enable researchers to more easily integrate the expertise and … be paid for by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds. … placed in rank order by the reviewers. The ranked proposal list, along with a recommendation from management at JGI and …
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Who We Are
The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located at Lawrence Berkeley National Laboratory. The JGI consists of around 280 researchers and support staff in the Integrative Genomics …
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Natural Prodcast Episode 24: Jackie Winter and SMC
Doering and Bryce Foster and too many others to name at JGI for the last two years or so. SMC is now released and ready for the public to tear it up. I’m super excited about this thing, and I hope you will be too. If this … that there’s a lot of fragmented — identifiable BGCs but highly fragmented, in most of the metagenome sequences that …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… you guys. I’m trying really hard just for you. And the JGI Comms team. But mostly you. Anyway…I’m really happy … But what was really interesting is when I started my lab in 2018, several papers came out right in a row all about this … trans in order to cyclize at that small of a ring, which is highly unfavorable. DAN: Oh, I did not know that. That's …
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