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… Prodcast,” a podcast about the science and scientists of secondary metabolism.  Brad Moore, UC San Diego and Scripps … first genome sequence with you. Brad: That’s right,  Dan: JGI did it in fact. Brad: That was a magical project I … pairs. It was not linear, like Streptomyces , but circular. 10% of the genome encoded natural product pathways. Dan: …

… The JGI’s Metabolomics Program works to uncover the roles of … metabolites, genes, and proteins. It also enables exploration of energy and nutrient exchange, as well as microbial and plant responses to environmental changes. With advanced mass … of experimental workflows and computational analysis, JGI scientists are able to link metabolic activity with gene …

… about natural products and the science and scientists of secondary metabolism. Hey there, and welcome back to Natural … tell a quick story. Looking back, the year was probably 2010, 2011, I was a, uh- actually, I’ve got the t-shirt on … of question have you applied them? Dan Udwary: Well, at JGI we have the Atlas of Biosynthetic Clusters . And this is …

… Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hey there and welcome back for … can use peptides for! That’s what his collaboration with JGI is all about, and we talk about it a bit here. I have … But, say, the last time I checked, it was on the order of 10,000 species. And whenever you’re talking about a new …

… Microbes drive critical ecosystem functions and affect global nutrient cycling, however they do so under strong constraints exerted by viruses. Research in the viral … measurements ( Who is active when/where, and how? ). The JGI Viral Genomics group attempts to address this question …

… JGI Mission As a U.S. Department of Energy Office of Science user … genomic capabilities, large-scale AI-ready data and professional expertise to support the global research community in studies of complex biological and environmental systems. We optimize our service to the community …

… — before any work can begin, including the submission of samples for sequencing, or the submission of … User Facilities, is a legally binding contract.   All User researchers must have their home/employing institution sign a JGI Non-Proprietary User Agreement and Appendix. An Appendix …

… The mission of the Joint Genome Institute is to serve the scientific … To jointly support these missions, and to expand upon highly successful past collaborations, the DOE JGI, NERSC and KBase issued a call for proposals in … review cycle. All proposals undergo technical review by JGI staff as well as staff at the other participating …

… DAN UDWARY: Hey, everyone! Welcome to the “Self Promotion Episode” of Natural … Doering and Bryce Foster and too many others to name at JGI for the last two years or so. SMC is now released and … And you have these different types of particulate like 2.5, 10 PPMs and just the size of the particle and how far they …

… DAN: Hello, everyone, and Welcome back for Episode 14 of Natural Prodcast . … and head of the Secondary Metabolites Science Program at JGI, and also my boss, Nigel Mouncey. I got him on to talk … had a high throughput screening platform where we’d look at 10,000, 15,000, 20,000 mutants a week. We started doing a …

… The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library preparation, Biodesign and pathway engineering Mass spectrometry … outputs for each product. For custom requests not on this list, or to discuss experimental design for a proposal, we …

… sequencing, synthesis, and metabolomics at the JGI for projects of relevance to Department of Energy (DOE)  Mission Areas . Through this program, the DOE aims to advance … call is for expansive projects that leverage a range of JGI capabilities, and also requires a Letter of Intent. The …