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FICUS Overview
… initiative was established in 2014 to encourage and enable researchers to more easily integrate the expertise and … increasingly collaborative and multidisciplinary nature of DOE mission science projects, this initiative aims to … be paid for by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds. …
Learn more
Natural Prodcast Episode 18: A CSP Primer
… with my co-host Alison Takemura, who’s moved on from JGI to do real journalism, and we wish her all the best. … Later on, I’ll introduce my new co-host, who I’m really excited to be working with, and I think you all will be too. … what are you going to do. So, you probably know that “DOE” is the United States Department of Energy, which is a …
Learn more
Community Science Program
… sequencing, synthesis, and metabolomics at the JGI for projects of relevance to Department of Energy (DOE)  Mission Areas . Through this program, the DOE aims to … of Work document. At the completion of a project, the JGI makes the assemblies, gene annotations, and analyses …
Learn more
Data Ecosystem
… as well as ensure cohesive data standards, the JGI partners with a number of facilities.  … Through its partnership with NERSC and the DOE Energy Sciences Network (ESNet), the JGI has unique … modeling and understanding. JGI and KBase are designated DOE Office of Science Public Reusable Research (PuRe) Data …
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Who We Are
…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located at Lawrence … National Laboratory. The JGI consists of around 280 researchers and support staff in the Integrative Genomics …
Learn more
Frequently Asked Questions: Project Management
… products categorized by Science Program.  … The majority of JGI projects come from the user community. Find out about … request a JGI Single Sign On account at https://signon.jgi.doe.gov . This account can then be used to submit proposals, … for DNA sequencing. … No. However, the JGI does maintain a list of protocols, found in our HERE (TK) , used …
Learn more
Natural Prodcast Episode 14: Nigel Mouncey
… check it out. You can get more info at usermeeting.jgi.doe.gov . And I’ll be sure I put that link in the show … amazing.  NIGEL MOUNCEY: Yeah. And the ag industry is highly regulated and that drives a lot of the timeline.  … examples of that?  NIGEL MOUNCEY: So one thing I’m really excited about is actually now integrating our approaches with …
Learn more
Natural Prodcast Episode 24: Jackie Winter and SMC
… data portal I’ve been working on with my colleagues Drew Doering and Bryce Foster and too many others to name at JGI … and ready for the public to tear it up. I’m super excited about this thing, and I hope you will be too. If this … that there’s a lot of fragmented — identifiable BGCs but highly fragmented, in most of the metagenome sequences that …
Learn more
Data Policy
Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data Policy. It is our … of the data at outside repositories),  (2) PI request to list data publicly, (3) at the end of the embargo period. If …
Learn more
Metabolomics Program
The JGI’s Metabolomics Program works to uncover the roles of … in living systems, particularly as they relate to DOE missions in the bioeconomy, sustainability, and … ENVnet can be used in your custom Python applications but highly recommend using the workflow in  GNPS2 .   … In …
Learn more
Natural Prodcast Episode 7: Ben Shen
… think his energy is infectious. DAN: I’ll say up front that JGI recently started collaborating with Ben and his group to … natural product gene clusters, and we’re all really excited about that, and I think that comes across in the … What is beautiful for natural products is nature! Nature does this sort of – if you think of nature as a scientist, …
Learn more
Natural Prodcast Episode 9: Roger Linington
… let me know! I’m dying to hear from you. Toss an email to  jgi[email protected] , or leave us a review on Apple Podcasts … to that here in North America. ALISON:  Yeah, and it does sound like your career has incorporated a lot of … community effort. We’ve had tremendous support from lots of researchers around the world. Europeans and North Americans, …
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