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Natural Prodcast Episode 15: Katherine Duncan
… was really before– or kind of around about when the first genome sequencing was done. But natural products– marine … with genomics and the kind of things that I do with genome mining. And figuring out how to put that together, I think, … to hear more science from her, check out her podcast Genome Insider. She talks to lots of great scientists outside of …
Learn more
Natural Prodcast Episode 23: Aaron Puri
… DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m working on this … And it actually was jumping onto the I ntegrated Microbial Genomes and Metagenomes, the IMG platform that JGI has that … clusters. And one can think about when we talk about genome mining in organisms a lot of times they’re genetically …
Learn more
How to Submit Sequencing Samples
… the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on accessing sample-level reports and tracking … and PacBio sequencing workflows and provide guidance as to how to perform sample QC prior to shipment: Importance of …
Learn more
Plant Microbial Interactions Group
… Plants are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental … all contribute to a dynamic ecosystem. We are interested in how plants self-organize, influence, and are influenced by …
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Metagenome Program
… The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … and many other applications. By understanding how microbes contribute to ecosystem functions, the Program … The Metagenome Program focuses on the high-throughput sequencing of …
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How Microbes Can Protect Plants in Drier Straits
… A mini-episode looking at the efforts of Pankaj Trivedi, whose … Science Program, to use microbiome science to help make plants more resilient to drought. …
Learn more
Secondary Metabolites Program
… of secondary metabolites across bacteria, fungi, algae and plants. These molecules, which are not essential for … defense, nutrient acquisition and communication. Studying how these compounds are biosynthesized and their roles in the environment, can unlock new avenues for bio-based products and bioenergy …
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How To Use Our Systems
… One of the JGI’s key assets is our user community, comprising a broad range of researchers and trainees who use JGI resources and expertise. These … community of users. Each portal lists a contact, or you can reach out via the form on our website.   … Looking for BBTools? Find it here.  …
Learn more
Project Management Office
… to onboard users and guide them through the process of working with our facility. This includes help with: preparing a Statement of Work, completing a formal User Agreement, … Please review our FAQ in advance of contacting the PMO office.  … Before work can start on any approved proposal – including the …
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Environmental Genomics Group
… Research in the Eloe-Fadrosh group focuses on using genome-resolved … and characterize genomic information from uncultivated microbes and viruses. We develop computational approaches to … on the assembly of metagenomic sequence data into microbial genomes, which is of fundamental value to improving our …
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Metabolomics Program
… them with genomic data to enhance our understanding of genome science, organisms, and ecosystems at the molecular … biogeochemical processes, development of high performance plants and microbes, and understanding microbiome interactions. The  … metabolomics with genomic data to gain insights into how small molecules function within plants, microbes, and …
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New Lineages of Life Group
… of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine learning … discovering and characterizing giant viruses, which possess genomes and particle sizes that rival those of cellular …
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