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Natural Prodcast Episode 15: Katherine Duncan
… was really before– or kind of around about when the first genome sequencing was done. But natural products– marine … You can find links to transcripts, more information on this episode and our other episodes at  naturalprodcast.com . … to hear more science from her, check out her podcast Genome Insider. She talks to lots of great scientists outside of …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… exposure to working with Streptomyces, learning more about genome mining, as well as isolation and a little bit of … so we just talked to Aaron Puri [coming up in a future episode!] and we were talking about signaling molecules. And … nearby. And of those once we did the predictions, about 140 unique cyclic peptides. And from that, about 130 of them …
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About Us
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The Big Deal About Short Plants
… Despite their diminutive stature, “short plants” such as mosses could be uniquely powerful in helping … plant genetic sequences to what they do. But sequencing the genome of one short plant — fire moss — had an unexpected …
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Plant Microbial Interactions Group
… Plants are complex organisms that harbor a fantastic … contribute to a dynamic ecosystem. We are interested in how plants self-organize, influence, and are influenced by … rhizobacterium (PGPR) Pseudomonas simiae WCS417. One suggested function of these phage genes is the …
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Sequencing Technologies & Products
… of sequencing products The JGI operates highly scaled short- and long-read sequencing pipelines. This includes … profiling transcription factor binding sites across entire genomes. This technology has been further scaled to a … increasing efficiency and scalability. Read more about DAP-seq in this science feature. …
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Who We Are
…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a high-throughput AI-centric … through analyzing and harnessing genomic information from plants, fungi, algae, non-medical microbes, microbial …
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Environmental Genomics Group
… Research in the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify and … computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … and reconstruct metabolic properties encoded within those genomes. Our aim is to more fully capture microbial and …
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Microbiome Data Science Team
… advances in management, processing and visualization of “big data,” and artificial Intelligent/machine learning … group focuses on Microbiome Data Science and analysis of Big Data. The Research Team   … 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, Science …
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JGI Portals
… Data Portal files will be inaccessible July 22–July 24 for computing upgrades . We regret any inconvenience. … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to all researchers. … for comprehensive access to information regarding genome and metagenome sequencing projects, and their …
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DNA Synthesis Program
… Genome to Enzymes and Pathways focuses on discovering and … vital to DOE missions. Using bioinformatics tools and genome portals, we study lignocellulose decomposition, CO2 … analysis and annotation of all publicly available genomes from three domains of life, in a uniquely integrated …
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Secondary Metabolites Program
… of secondary metabolites across bacteria, fungi, algae and plants. These molecules, which are not essential for … metabolites produced by bacteria, fungi, algae and plants. These compounds are key to organisms' interactions … factors and determine their binding sites across multiple genomes. Computational prediction of heterologous …
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