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Natural Prodcast Episode 19: Bill Fenical
… for you here today. We got the opportunity to talk to one of the real legends of natural products, Professor Bill … Wow. It’s all happened so fast. I mean, in terms of human evolution and knowledge, like discovering that the ocean is … time, we found another molecule. This time it was from a fungal strain collected from sediments in the ocean. No, …
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Computationally Classifying Fungal Lifestyles
… Machine learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of concept, researchers developed an algorithm that … and biofuel production. Learning about the ecology and evolution of  Dothideomycetes could provide more insights …
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Products
… Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of the product and deliverables as well as target cycle … to determine coverage of variants depends on project Fungal Minimal Draft Lower coverage short-read whole genome …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… four forests, researchers have leveraged data from the 1000 Fungal Genomes project to form new connections between … registers the sound — one thing is for sure: there are lots of fungi around. Within a forest’s soil, hundreds of species … forest’s ecology. They store carbon and cycle key nutrients like nitrogen and phosphorus.  This way, the fungi of forest …
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Natural Prodcast Episode 18: A CSP Primer
… while, but Natural Prodcast is back again for another round of episodes. If you stick around for the next few months, … and scientific research, especially at US National Labs, like Lawrence Berkeley Lab (that’s LBL), the National Lab … And I think also the quality that we provide. So for fungal and for a lot of our eukaryotic genomes, all our …
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Industry Engagement Program
… joined the JGI in 2017, he brought with him 20 years of industry experience — and an opportunity to expand the JGI’s portfolio of user companies. Now the Department of Energy is uniting … National Labs and industry, including User Facilities like the JGI, through its Genesis Mission. Launched in 2025, …
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Natural Prodcast Episode 11: Marnix Medema
… Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … in more detail. Especially if you want to look at the evolution of these gene clusters, for example, you really … are protecting the plants against pathogens. So usually fungal or oomycete pathogens. In this case they worked on a …
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Fungal Friends or Foes in Plant Roots
… host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with … other plant-associated fungi. Their analysis identified fungal gene families that help determine if these fungi act … for candidate bioenergy feedstock crops. Summary A plant is like an office building, its roots are akin to the ground …
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Natural Prodcast Episode 16: Marcy Balunas
… know that that’s ever necessarily like a good description of anyone because chemistry means a lot, especially when … what we know is they’re quite selective in some way for antifungal activity. They are also, some of them, are … was episode 6.] about this. And really his focus was on the evolution of these systems and I understand you’ve worked on …
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Metagenome Program
… uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … drive innovations that could advance our understanding of Earth’s ecosystems. … and virus-microbe interactions, over ecological and evolutionary time scales.The Metagenome Program combines …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… schedule. This should be coming out on the first Thursday of the month, just like I promised. Now I just have to make this whole “on-time … students, we obviously can't put any antibiotics or antifungals in there. So they get just a smattering. JACKIE: … Purdue, about bacterial signaling molecules and regulation of biosynthetic pathways, student mental health, and getting …
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Igor Grigoriev
… the pharmaceutical industry. He holds joint appointments as Fungal and Algal Program Head at the JGI, a Senior Scientist … at Lawrence Berkeley National Laboratory, and an Adjunct Professor of Plant and Microbial Biology at University of … from protists to plants. In 2009, he launched the JGI Fungal Genomics program which resulted in over 2500 fungal …
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