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Natural Prodcast Episode 15: Katherine Duncan
… … Dan Udwary: Hey, Alison Takemura: Hey, Dan. Dan Udwary: Today … I think it must’ve been about 2001, maybe, and so it was before smartphones and before laptops and everything. And I … One, growing the micro-organism– actinobacteria in this case– in the lab, you are only going to– you’re giving it …
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Microbial Program
… and analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including … inter-organismal interactions. These insights are crucial for addressing key environmental challenges, such as … functions and interactions, the Microbial Program supports innovations in sustainable agriculture, carbon …
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Natural Prodcast Episode 4: Nancy Keller
… the science and scientists of secondary metabolism.  DAN: Welcome back to Natural Prodcast! This is episode 4! From here on out, for a while, we’re going to be presenting some conversations … with the bacteria that you’re working with. Is that the case for fungi?   NANCY: I think a lot of labs yet are doing …
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Metabolomics Program
The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological … techniques and computational tools, the program supports foundational research related to soil nutrient … biogeochemical processes, development of high performance plants and microbes, and understanding microbiome …
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Natural Prodcast Episode 2: The Primer, Part 2
This is part 2 of our “primer” episode, so if you ended up here somehow without having listened to the first part, you might be a … so secondary metabolism is throughout nature, except maybe for animals and humans, not as much. You know, we have this …
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The Big Deal About Short Plants
Despite their diminutive stature, “short plants” such as mosses could be uniquely powerful in helping scientists link plant genetic sequences to … they do. But sequencing the genome of one short plant — fire moss — had an unexpected hurdle: ginormous sex …
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Partnerships Development Team
Developed in 2017, the PDT was established in part to help better-connect industry to … partnered with the JGI. The Business Development Team works closely with the Berkeley Lab Intellectual Property Office … high-throughput sequencing and other resources at the JGI for projects of relevance to Department of Energy missions. …
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SPRUCE-ing Up Science
A former JGI intern is now applying his internship lessons on … survive elevated temperatures that normally would kill the moss may hold clues to how these carbon sink environments … worked well to explain something at a glance and, in some cases, what didn’t.  After wrapping up his summer …
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Special Initiatives & Programs
Overview The JGI provides sequencing, synthesis, and targeted metabolomics support for DOE-BER funded awards, including awards funded through  … Center , led by the University of Wisconsin in Madison, in close collaboration with Michigan State University in East …
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Sequencing Submission Requirements for DNA Synthesis
When submitting sequences to the JGI DNA Synthesis program, … please include the following items: … Sequence files for all constructs should be emailed to  Miranda … File There are several easy-to-use open source tools for converting DNA sequence files into well-formed GenBank …
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The More the Merrier: Making the Case for Plant Pan-genomes
… system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” … Laboratory (Berkeley Lab), relied on a model grass system for answers. Their work  recently appeared in  Nature … nonredundant set of genes found in a species, but in this case, the team included two species in the pan-genome . …
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Comparative genomics of pyrophilous fungi reveals a link between fire events and developmental genes
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