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Natural Prodcast Episode 9: Roger Linington
… nations to do natural products based drug discovery, predominantly in diseases of importance to each host country. … that problem, whereas the North Americans tended to be slightly more out of the box. So they would approach the … Some of the older articles aren’t digitized. And so that makes them hard to access. The articles – the structures in …
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Natural Prodcast Episode 1: The Primer, Part 1
JGI’s Secondary Metabolites Science Program, which I was hired into, and my job is to do cool research, and also to … up and I couldn’t find the answer, so it’s not known as far as I could tell.  ALISON: It could be bacterial … some animals from eating the bark or something that makes them ill when they do. And so the natural products are …
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Project Management Office
… that all work performed in its User Facilities be covered by the User Agreement. … PMO: Frequently Asked Questions … PMO Lead, Metabolomics Program Kerrie Barry Plant and Algal Genomics Natasha Brown Supply Chain Manager Tijana …
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Natural Prodcast Episode 4: Nancy Keller
… liver cancer and infects peanuts and corn if they’re not stored properly. And so I read lots of your papers when I was … bacterial investigations. You’ve spent your whole career as far as I’m aware working on specifically fungal natural … goes.    ALISON: Is this the only class of organisms that makes this polyketide structure that we’re aware of?   …
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Webinars on Offerings & Capabilities
… covering how to use our data portals here.  … … Shining a Light: Advanced Photon Source Capabilities for FICUS …
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Products
… of variants, or pool of variants with sample sequencing to predict the number of successful variants made depends on … microbial assembly of short-read sequence data, many unordered contigs. Assembly, annotation ( IMG ) 280/298 Microbial … Assembly, annotation ( IMG ) Depends on project Plant and Algal Standard Draft Whole genome shotgun sequencing. …
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Making a Lichen Together
… cosmopolitan: more than 20,000 ascomycete species and hundreds of microalgae are able to partner to form lichens. … model global carbon and nitrogen cycling. Summary To shed light on lichen, an international team led by Daniele … and colleagues worked with Igor Grigoriev, the Fungal & Algal Program lead at the US Department of Energy (DOE) …
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A One-Stop Shop for Analyzing Algal Genomes
… of its kind, with an interactive browser that allows algal scientists and enthusiasts to look deep into more than … of this evolutionary diversity, algal genomes can be incredibly complex and difficult to sequence and understand. A … PhycoCosm’s genome browser to see their favorite alga’s predicted genes and their organization, and analyze genes in …
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Institutional User Agreements
… of sequencing data for synthesis. This agreement, required by the DOE for all work performed in its User … identifies the type of work or specific proposal to be covered under the Agreement. The signing official must have the … your Host Institution and LBNL is required. NOTE:  If a PI changes academic institutions or a new PI is named during …
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Plant Program
… with other organisms, and adapting to environmental changes. The program lays the groundwork for sustainable … by environmental change, focusing on plant resilience — highlighting the vulnerabilities of monocultures and the … benefits of nitrogen-fixing nodules in legumes, which can reduce dependence on fertilizers. The study of secondary …
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Metabolomics Program
… as well as microbial and plant responses to environmental changes. With advanced mass spectrometry techniques and … data.  This is a web-based service returns a list of scored reaction and gene matches associated with metabolites and a list of scored metabolite matches associated with genes.  … …
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Mission
… sequencing, informatics, and technology development pioneered at the U.S. DOE genome centers at Lawrence Berkeley … Berkeley Lab, leased laboratory and office space in a light industrial park in Walnut Creek, California, to … capabilities to support BER's mission of achieving a predictive understanding of complex biological, earth, and …
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