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Microbiome Data Science Team
… Biology is currently experiencing a revolution brought on by rapid developments in genomics and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … advances in management, processing and visualization of “big data,” and artificial Intelligent/machine learning …
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Partnerships: Myco-Ed
… Undergraduate Research Experience (CURE) that consists of coordinated hands-on experiments across fungal biology teaching labs. The purpose of the program is to: train students and professors in … has:  ~50 lineages selected for sequencing 16 genomes released 20 members from 15 institutions 300+ students 800+ …
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Natural Prodcast Episode 23: Aaron Puri
… DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m working on this the … And I really dove into microbial physiology and microbial genetics, and really away from chemistry and synthesizing … ]. Well, so that’s weird, because it’s a bastardized version of the two because we’ll say methyl so we call them …
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Frequently Asked Questions: Proposal Submission
… See below for a list of Frequently Asked Questions about our proposal submission process. You can review successful letters of intent and submissions at the bottom of the page.  … Review the list of open calls ; click on the call link to see specific … go to the proposal submission page , login using your JGI account (create one here if you don’t already have an …
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Natural Prodcast Episode 11: Marnix Medema
… Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … with Marnix Medema , from Wageningen University in the Netherlands. Marnix is still pretty young, but he’s been … that — fingers crossed, tenure relying on this — antiSMASH version 1 comes out. The reviewers were not kind to my …
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Improving the Cacao Genome and Phytozome
… fungal infections. That’s why Mars, Inc., a maker of chocolate for more than 100 years and one of the world’s … is now available for comparative purposes on the latest version of the JGI plant portal Phytozome at  phytozome-next.JGI.doe.gov . One of the goals …
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Natural Prodcast Episode 7: Ben Shen
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … But today, you have so many other say morphological, genetic, you know say sugar, lipid composition – so I think … to isolate the proteins. The proteins are the biological version of the catalyst to catalyze the production of the …
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University of California, Merced Internship Program
… experience at the JGI, the Genomics Internship Program soon expanded to include undergraduate students. To date, more … than 90 UC Merced students have contributed to the research of numerous JGI scientists. Interns say their experiences … industry-level work and coding. Receive mentorship, network and connect with Lab staff. Increase their technical …
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Natural Prodcast Episode 3: The Primer, Part 3
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … in print, but we live in the information age and the ebook version is available at most online sellers. I think it’s as … developed to the point that you could understand the genetics of secondary metabolism, it became possible to do …
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DNA Synthesis Program
… The JGI’s DNA Synthesis Program supports a wide range of projects, from single-gene synthesis to the synthesis of … the program enables the design and synthesis of complex genetic pathways and biosystems. It The program fosters … scientists to drive innovations that align with DOE's missions. …
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FICUS-NERSC/KBASE
… The mission of the Joint Genome Institute is to serve the scientific … ( NERSC ) is to accelerate scientific discovery at the DOE Office of Science through high performance computing … expand upon highly successful past collaborations, the DOE JGI, NERSC and KBase issued a call for proposals in …
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How to Submit Sequencing Samples
… Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on accessing … sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality has been the rate-limiting …
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