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User Support
… and coordination with IMG , GOLD and others for data annotation and submission Tracking, monitoring and …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… Protein annotations provide insights into environmental tendencies … microbes. Researchers can use the tool to correlate protein annotations with ratios of DNA sequence fragments from the … Impact The initial analysis highlights abundances of gene annotations that provide insights into the nutrients that …
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Publication Policy
… and any other contributions, such as assembly, analysis, annotation, verification, creation of genome browsers, etc. …
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Protocols
… by JGI and the JGI user community below for DNA preparation tools, high molecular-weight DNA extraction and RNA …
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Natural Prodcast Episode 9: Roger Linington
… we’re now very much – we’re interested in how we can build tools which will let us see the whole landscape of natural … – it’s really a bit of a mess. And many of the system wide tools that people would like to build would greatly benefit … basal training set we could use to build more sophisticated tools, because now we had a very reasonably large set of …
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An Automated Tool for Assessing Virus Data Quality
… to this point, there has been a lack of fast and accurate tools for researchers to assess the quality of … the virus-host boundary clearly defined using functional annotation methods, it was possible to distinguish between …
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Strain Engineering
… yeasts and algae previously with little to no genetic tools enabling heterologous expression and functional …
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Analyze Data
… to reuse. Armed with the high-quality data we generate, tools like artificial intelligence can empower the global …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… of always working on natural products but just different tools and how to really access and manipulate these pathways … public. Things that you do to BGCs– you can add your own annotations and do things to the data — That all becomes … is– anybody who’s worked in our field knows that getting an annotation for a BGC, it’s not a consensus, right? Every …
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DAS Tool for Genome Reconstruction from Metagenomes
… from complex metagenomes than any of the single binning tools alone,” primarily because of its capacity to harness … binning methods also extends to harnessing future binning tools. DAS Tool is an example of how JGI users can benefit from the ETOP program, as tools such as this can help advance genome-centric analyses. …
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Science Programs
… approaches for and with users, and create computational tools and resources for them. Their concerted efforts help …
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Natural Prodcast Episode 17: Cassandra Quave
… it across the community. So that’s been used in supporting educational initiatives and work with school children and … get a DNA sequence first. And there are plenty of software tools to find natural product gene clusters, and even be … of platforms like GNPS, it’s very poor in terms of annotations on plant natural products. Rich, rich in …
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