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New Lineages of Life Group
Our research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic …
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Micro-Scale Applications Group
… the quality of single-cell genomes and directly link functional information with individual cells. Research Team  … measure environmental microbiome activity levels.This functional assay lets us move beyond cataloging the genes of … The JGI provides users access to cutting-edge cell sorting, DNA amplification, and sequence analysis to recover the …
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Plant-Microbial Interactions Group
… omics technologies, strain engineering and experimental characterization methods, in addition to bioinformatics … single-cell atlas comprising Sorghum, Switchgrass, and Brachypodium datasets. We recently profiled the association … … Plant / Bacteria / Viral Interactions … Single-cell characterization of plant/environmental responses … Selected …
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Viral Genomics Group
… computational exploration of uncultivated viral diversity, characterization of molecular mechanisms involved in …
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User Advisory Committees
… operations, and scientific relevance and quality. … The DNA Synthesis Science Advisory Committee is chartered to offer … Executive Committee (UEC) … Scientific Advisory Committee … DNA Synthesis Science User Advisory Committee … Fungal & …
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Microbiome Data Science Team
… and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … of host-virus interactions, the exploration of the functional dark matter as well as the development of novel … Nayfach S, et al. (2021) Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome. Nat Microbiol . …
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Mission
…   The JGI provides integrated high-throughput sequencing, DNA design and synthesis, metabolomics and computational analysis that … constitute the largest reservoir of biodiversity and functional versatility on Earth. Their activities and …
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Natural Prodcast Episode 11: Marnix Medema
I talked about the basics of genome mining, which is using DNA sequence to identify and interpret biosynthetic, … of years before that, which stipulated if you submit a DNA sequence to a database, what kind of metadata would you … least parts of the structures of the molecules that use biosynthesis is encoded by these gene clusters and figuring out …
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Natural Prodcast Episode 16: Marcy Balunas
… local environments, and so they don’t transfer a lot of DNA back and forth, especially across species. And so then … in the organism in its sequence that encode for that biosynthesis. But sometimes you have to know what those are in … to hear from you. We have projects in genome sequencing, DNA synthesis, transcriptomics, metabolomics, and natural …
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Natural Prodcast Episode 12: Nadine Ziemert
… is a biosynthetic chemist, who was more working from the biosynthesis standpoint. And then I was talking at the same … to hear from you. We have projects in genome sequencing, DNA synthesis, transcriptomics, metabolomics, and natural … our short series of genome mining, the science of examining DNA sequence to try and predict the structures of secondary …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… of Synthetic Biology celebrates research enabled by the JGI DNA Synthesis Science Program. Fashioning DNA outside a cell is … the JGI DNA synthesis Community Science Program (CSP) Functional Genomics, the system allows scientists to test …
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Natural Prodcast Episode 3: The Primer, Part 3
… 80s and the 90s. And so we started to be able to explore DNA sequencing and actually get to the DNA sequence – sequences for the genes that code for the … But some of those pathways might not be tractable to synthesis. So synthesis is still very expensive and very …
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