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… DAN: Welcome back for episode 9 of Natural Prodcast. This week, Alison and I talk to Roger … we’re now very much – we’re interested in how we can build tools which will let us see the whole landscape of natural … to try and create an open source database of all known microbial natural products. So if you think about natural …

… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast– a … of a particular part of the Streptomyces phylogenomic tree, then you will be in a position to say, this group of … I have the feeling that once we have the synthetic biology tools, we finally are in a position to exploit secondary …

… crops. But most available genomes are from narrow swaths of the plant tree of life. One project aims to change that. …

… The JGI supports the entire data life cycle — from experimental design to reuse. Armed with the high-quality data we generate, tools like artificial intelligence can empower the global … The JGI is involved in efforts to integrate data in support of new research questions that span domains. We also work …

… DAN: Hello, everyone, and Welcome back for Episode 14 of Natural Prodcast . There’s been a lot going on, so I took … I did my undergraduate in microbiology and then PhD in microbial genetics in the UK. And came across to the US for … using these together along with all of our computational tools to really build out much more of an integrative …

… I mean, in terms of human evolution and knowledge, like discovering that the ocean is a really vibrant, vital place … powerful people. These were people that really controlled microbial drug discovery. And a guy like me, with no … for culturing, and then of course using modern phylogenetic tools measuring genes, the 16S gene, and comparing it with …

… do your organic reaction and see if it smells like a pine tree. Like there’s no cookie cutter reactions here, we’re … Canada. I just got back from a conference in Canada on antimicrobial resistance sponsored by the Garner foundation. And … and I’m really excited about it. Because now we have the tools through genomics, and metabolomics, to ask these …

… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … we talked about sponges, go pull a sponge or extract some tree bark. And so you’re just taking something, you’re … more and hear more about what JGI and collaborators are discovering. DAN: Alright, well, I’m glad you’re on board, …

… — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing data for synthesis. This agreement, required … User Agreement and Appendix. An Appendix identifies the type of work or specific proposal to be covered …

… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … at some topic that I’m working with about now. I made a tree of different compounds, and I’d looked at it from an … more into the meta genome mining. We started to build the tools for natural product researchers that easily can …

… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … lot about chemistry. And he has been a good friend in my life. And so I’m very happy to be here and have Eric sitting … learn how to make peptides, rationally. We’d find these tools, we’d understand them, and we’d apply them. And so, I …

… start pinning down how a fungal symbiont spurs growth of poplar, a potential biofuel feedstock.     The Science … The fungus is almost always found among and within poplar trees, and in an effort to understand its influence on the … of interkingdom communication between the plant and fungus. Discovering how microbes can influence plant physiology …