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… … DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … at some topic that I’m working with about now. I made a tree of different compounds, and I’d looked at it from an … more into the meta genome mining. We started to build the tools for natural product researchers that easily can …

… team has three subgroups: Synthetic Biology Lab : a user science group dedicated to user project design, assembly, … group and focused on new technologies and optimizing tools — including strain engineering — to make them more … automations for DNA design, assembly and analysis Overview of synthesis products The JGI DNA Synthesis platform enables …

… here today, and we wanted to talk to her about a whole list of things. So we have a Scripps background shared together, … that I’ve appreciated since starting my own group is these tools, in terms of looking at the chemistry produced by … And sometimes, in terms of biological activities– like antimicrobial or something– sometimes a little difference is …

… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … lot about chemistry. And he has been a good friend in my life. And so I’m very happy to be here and have Eric sitting … learn how to make peptides, rationally. We’d find these tools, we’d understand them, and we’d apply them. And so, I …

After studying the mechanism of action of antifungal natural products and their … primary interest and passion. Dr. Woyke stepped into the Microbial Genomics Program Lead position in 2009 and assumed … of bacterial and archaeal isolates expand coverage of the tree of life. Nature Biotechnology 35, 676-683. Schulz et …

… … Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … last decade or so. He’s involved with a lot of the common tools that genome miners use, including antiSMASH, MIBiG, … IMG kind of hooks into IMG’s data. IMG being Integrated Microbial Genomics at JGI, a large data set of bacterial …

… ,  Science Focus Areas  (SFA) opportunities, and the  Office of Science Early Career Research Program .   If … breakthroughs in basic science, and is exploring microbial-based synthesis of fuels beyond ethanol. … The JGI … and other resources. For more information, contact Tanja Woyke, Deputy for User Programs . … Biological and …

… little vague to me. What do you mean by putting a bunch of tools in one package? DAN UDWARY: Oh, sure. So if I wanted … of the IMG data portal , which is a larger portal for microbial genomics. IMG stands for Integrated Microbial … bacterial and archaeal orders as seen on the phylogenetic tree, with new lineages of uncultivated genomes from the GEM …

… of a particular part of the Streptomyces phylogenomic tree, then you will be in a position to say, this group of … I have the feeling that once we have the synthetic biology tools, we finally are in a position to exploit secondary … UGA-Langebio in Irapuato, Mexico. His interests are in microbial diversity and evolution, particularly as how …

… … DAN: Welcome back for episode 9 of Natural Prodcast. This week, Alison and I talk to Roger … we’re now very much – we’re interested in how we can build tools which will let us see the whole landscape of natural … to try and create an open source database of all known microbial natural products. So if you think about natural …

… know that that’s ever necessarily like a good description of anyone because chemistry means a lot, especially when … tell us about this squid-microbe relationship. Or is it a microbial community with microbial community relationship?  … we talked and I’ve noticed that you stay focused on the science and I think that’s great. But I spend a lot of time …

… do your organic reaction and see if it smells like a pine tree. Like there’s no cookie cutter reactions here, we’re … Canada. I just got back from a conference in Canada on antimicrobial resistance sponsored by the Garner foundation. And … and I’m really excited about it. Because now we have the tools through genomics, and metabolomics, to ask these …