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Frequently Asked Questions: Project Management
… address, click the “Request email change” link. This will generate an email that will go to an administrator to … and have not been validated by the JGI, but are provided as general guidance. … If you have concerns about shipping your DNA/RNA on dry ice, Gentegra products may be appropriate alternatives. See …
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PEATmoss (Physcomitrella Expression Atlas Tool): a unified gene expression atlas for the model plant Physcomitrella patens
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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint Genome Institute … led a team that  recently published work on the JGI Plant Gene Atlas in  Nucleic Acids Research . The project spans 15 … to the overreliance on a few species like Arabidopsis or rice as homology models for computational function …
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JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom
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Natural Prodcast Episode 20: Brian Bachmann
… know. Second, I want to take a minute to introduce a new voice to the Prodcast. Please take a second to join me in … It was unpublished at that point. But people would push out gene clusters maybe once a month at most. Maybe twice a … at this point. So no company would ever be interested in developing them, doing the substantial amount of effort to …
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Data Policy
… of certain types of data to support their use by those generating data. The JGI Data Policy applies to research … not involved with the proposal under which the data were generated (e.g. not PIs or co-PIs) who wish to include … repositories (e.g. the Inventory of Composable Elements (ICE) repository and/or DNASU Plasmid Repository) at the end …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… (Toby) Kellogg and other researchers at the Danforth Plant Science Center (Danforth Center) drove up and down the … of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley … present in a given species).  “This is a great example of developing a large-scale genome infrastructure with a …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… changed the audio editing suite I use which had some nice magic that clean things up. So I didn’t get to talk to … the active site of an enzyme. So there is no promiscuity, generally speaking, in primary metabolism. Nevertheless, … could be a reasonable number if you are talking about a plant and a microbe interacting very stably. So it makes …
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Natural Prodcast Episode 15: Katherine Duncan
… I must’ve been around about 18. And I went to Marcel’s office. And he’s incredibly enthusiastic and gave me a bunch of … I was imagining some massive contraption for amplifying genes. I wasn’t really sure what actinobacteria were. Dan … transcriptomics, metabolomics, and natural products in plants, fungi, and microorganisms. If you want to …
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DAP-seq Drives Robust Mapping of Gene Regulation
… Multi-species assays yield an unprecedented view of plant evolution and adaptation.    Understanding how genes … Lead at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley … advance a fundamental understanding of genome biology and developing genome-scale engineering technologies to produce …
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Natural Prodcast Episode 4: Nancy Keller
… I worked at a high school. And one of the things that I noticed is all the food that the students got was coming from … ag[riculture] and I really liked – I became interested in plant disease in part because of what happened in my Peace … you know, how are our crops and people – in particular in developing countries – being affected by parasites.   NANCY: …
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Natural Prodcast Episode 7: Ben Shen
… Awesome. Yeah, I’ve heard a lot of good things about Ben. Nice to meet you, Ben. BEN: Hey, yeah! Great, I’m very happy … its potential application in human medicine. And so, we are developing enabling technology, not only to facilitate the … product chemistry? BEN:  Yeah. So, I was trained as a plant natural product chemist. When I first started in …
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