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… … DAN: You’re listening to the US Department of Energy Joint … episode is our conversation with Nancy Keller, a fantastic fungal natural products researcher from the University of … you know, how are our crops and people – in particular in developing countries – being affected by parasites.   NANCY: …

JGI Mission As a U.S. Department of Energy Office of Science user … development. Develop an understanding of microbial and fungal metabolism necessary to design communities, new … of almost all plastics. This drives the DOE’s focus on developing lignocellulosic biomass as a clean, renewable and …

With collaborative user projects, the JGI’s Plant Program delves into the … learning algorithms for gene annotation and protein folding models, to improve the accuracy of functional predictions …

… … DAN: Hello, everyone, and Welcome back for Episode 14 of … vision for secondary metabolism, his past in industry in developing natural products for agriculture, and his … as the fermentation process itself. And we built a nice modeling feedback loop for the fermentation work, which …

The Metagenome Program uses advanced sequencing technologies to … metagenomic data with detailed characterization of model systems to explore the dynamics of microbial … ecosystems and their evolution. The Program focuses on developing computational tools and visualization resources …

The JGI has diverse capabilities in: DNA and RNA sequencing, Sample … to determine coverage of variants depends on project Fungal Minimal Draft Lower coverage short-read whole genome … Isotope Probing (SIP) Used for the identification of active groups of organisms within a community. Individual samples …

… … DAN: You’re listening to the US Department of Energy Joint … its potential application in human medicine. And so, we are developing enabling technology, not only to facilitate the … natural products of microbial origin is around 30,000 from fungal, and a 40,000 from bacteria. Okay? And among the …

… … Dan Udwary: Hey, Alison Takemura: Hey, Dan. Dan Udwary: Today … Association for Marine Science. And then I started my own group in 2016. And it very much ties in all of those … and that are PhD students. And I think it’s a really nice model. I’d like to see more of this. It’s their ideas. So, …

… … DAN: You’re listening to the US Department of Energy Joint … where I was a graduate student. Aflatoxin, of course, is a fungal natural product which is a liver toxin when humans … Peptides.” Eric has done a lot of work in this area, and developing RiPP biosynthetic capabilities to engineer …

The JGI Project Management Office carries out a number of activities to facilitate world-class … DNA Synthesis and Single-Cell Genomics Vivian Ng Fungal Genomics …

Uncovering associations between plant roots and fungi that can help or … other plant-associated fungi. Their analysis identified fungal gene families that help determine if these fungi act … led by graduate student Fantin Mesny in Stéphane Hacquard’s group at the Max Planck Institute for Plant Breeding …

To expand access to integrated data, improve tools and infrastructure … in enabling systems biology analyses, such as metabolic modeling, that go well beyond genome annotation and … and individual genomes to metagenomes to systems-level modeling and understanding. JGI and KBase are designated DOE …