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… interactions occurring in microbiomes, these omics data must be complemented with single-cell resolution assays … to the development and maintenance of a number of viromics tools and resources. The main focus of these resource … phage proteins user-friendly integrated pipelines (MVP) and databases (IMG/VR) for viromics analyses …

… technology company Truss has resulted in the JGI Data Portal , a pilot download experience accessible from JGI’s plant portal Phytozome . Although the Data Portal is currently only … — it provides access to all of JGI’s genomic databases and tools,” noted  Kjiersten Fagnan , JGI’s Chief Informatics …

… of Science through high performance computing (HPC) and data analysis.  The DOE Systems Biology Knowledgebase ( KBase ) integrates systems biology data and tools to help predict biological function.   To jointly … sequencing projects, once work is under way, raw sequence data is released to NCBI’s Sequence Read Archive on a …

… Systems Biology Knowledgebase and the National Microbiome Data Collective.    … other relevant organisms. We provide access to large-scale datasets and analysis tools for genomes, metagenomes, and metabolomics through its … and contributing this information freely to the public databases. In 2004, the JGI established itself as a national …

… the idea of taking all the different natural products data that there is and putting things, coalescing them, so … basic questions that we can only really address with bigger data sets and integrated data sets. So yeah, in terms of, I … that I’ve appreciated since starting my own group is these tools, in terms of looking at the chemistry produced by …

… Energy Research Scientific Computing Center (NERSC) and data infrastructure projects—the DOE Systems Biology Knowledgebase (KBase) and the National Microbiome Data Collaborative (NMDC)—to provide access to datasets, workflows, and tools to seamlessly expand data functionality. Close …

… SMC – which is the new Secondary Metabolism Collaboratory data portal I’ve been working on with my colleagues Drew … of always working on natural products but just different tools and how to really access and manipulate these pathways … our users. So for those who are familiar with JGI’s IMG data portal , the Integrated Microbial Genomics, there was a …

… CRISPR gRNA design tool BOOST , which provides a suite of tools to automate sequence design for assembly by Gibson, … and Golden Gate methods SynTrack and associated tools, which track samples through the JGI’s Synthetic …

… by microbial partners. We use a variety of genomics-powered tools to study this complexity, including single-cell and … characterization methods, in addition to bioinformatics tools to elucidate phage function in this tripartite … atlas comprising Sorghum, Switchgrass, and Brachypodium datasets. We recently profiled the association between the …

… Manager will facilitate project execution by: Verifying metadata and coordinating with IMG , GOLD and others for data annotation and submission Tracking, monitoring and … your sequencing project at any time by logging on to the My Data Portal using your JGI login . After …

… did those sequences go? Like, what are the other scientific tools we offer people? TANJA WOYKE: Yeah. Also a really good … algal genomes, a lot of effort goes into generating these data sets. There’s a lot of manual work in terms of the … the assembly, the curation, QC, annotation of these data sets. For our eukaryotes, in addition to sequencing the …

… Phytozome workshop held during the June 2022 CROPS … Conference at the HudsonAlpha Institute for Biotechnology. Phytozome is the Plant Comparative Genomics portal of the …