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CRISPR gRNA design tool BOOST , which provides a suite of tools to automate sequence design for assembly by Gibson, … and Golden Gate methods SynTrack and associated tools, which track samples through the JGI’s Synthetic …

… by microbial partners. We use a variety of genomics-powered tools to study this complexity, including single-cell and … characterization methods, in addition to bioinformatics tools to elucidate phage function in this tripartite … atlas comprising Sorghum, Switchgrass, and Brachypodium datasets. We recently profiled the association between the …

… did those sequences go? Like, what are the other scientific tools we offer people? TANJA WOYKE: Yeah. Also a really good … algal genomes, a lot of effort goes into generating these data sets. There’s a lot of manual work in terms of the … the assembly, the curation, QC, annotation of these data sets. For our eukaryotes, in addition to sequencing the …

… (meta)genomic, (meta)transcriptomic, and functional genomic data and serving them to users via the Integrated Microbial … Genomes group is focused on:  Developing state-of-the-art data processing and analysis pipelines for the interpretation of microbiome omics data Developing forward-looking strategies for the …

… much I actually can learn just by really digging into the data and understanding what’s going on there. And now, … of searching the internet, searching literature, and making databases. Because that’s what I noticed is really a … more into the meta genome mining. We started to build the tools for natural product researchers that easily can …

The PhycoCosm data portal allows anyone to freely investigate … photosynthetic organisms. PhycoCosm is one of the largest data repositories of its kind, with an interactive browser … in algae. PhycoCosm joins other online data portals and tools created by JGI researchers, including the Integrated …

…   Gain access to omics technologies generating community data at zero cost —  submit a proposal.  …

… center and a lot of the really important recent events in data analysis and secondary metabolism over the last decade or so. He’s involved with a lot of the common tools that genome miners use, including antiSMASH, MIBiG, … efforts, like BiG-scape and BiG-SLiCE, and now the BiG-FAM database of biosynthetic gene cluster families. And he tells …

… sample receipt to completion of standard analysis.  Raw data is provided for all sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is complete. … projects. Assembly, annotation for ( Phytozome for plant, Phycocosm for algae) depends on genome Plant and Algal …

There is no cost to the user and no granting of funds. All data is made publicly available in accordance with  JGI’s Data Policy . In cases where the JGI provides customized …

… . You can find additional webinars covering how to use our data portals here.  … … Shining a Light: Advanced Photon …

Systems Biology Knowledgebase and the National Microbiome Data Collective.        … Learn more about our work at the …