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The JGI Data Portal: Improving User Experience
… technology company Truss has resulted in the JGI Data Portal , a pilot download experience accessible from … — it provides access to all of JGI’s genomic databases and tools,” noted  Kjiersten Fagnan , JGI’s Chief Informatics … work on IMG and GOLD,” said Steve Wilson, head of the JGI’s Systems Engineering Group. “Our team’s ultimate goal is to …
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An Automated Tool for Assessing Virus Data Quality
… can help researchers assess virus sequence fragments and data quality. The Science Through advances in sequencing … is challenging and often results in highly fragmented data, which limits the ability of researchers to accurately … to this point, there has been a lack of fast and accurate tools for researchers to assess the quality of …
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Fungal & Algal Program
… fungal and algal pangenomes, and integrate multi-omics tools to enhance functional studies. These efforts seek to … understanding of how fungi and algae contribute to ecosystems and industries. The program also explores … sampling of fungi, laboratory analysis and genomics data exploration. … The Mycocosm web portal provides data …
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Homepage
…   Gain access to omics technologies generating community data at zero cost —  submit a proposal.  …
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Partnerships: Myco-Ed
… train students and professors in laboratory techniques and data analyses compile original data for improving fungal … comparative analysis.  MycoCosm provides data and tools via a graphical user interface, ensuring that no … and potential applications. … The Department of Energy Systems Biology Knowledgebase (KBase) is involved in the …
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Natural Prodcast Episode 12: Nadine Ziemert
… much I actually can learn just by really digging into the data and understanding what’s going on there. And now, … of searching the internet, searching literature, and making databases. Because that’s what I noticed is really a … more into the meta genome mining. We started to build the tools for natural product researchers that easily can …
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User Support
Investigator Providing a general orientation to JGI systems to Investigators Preparation of formal Statement of … Project Manager will facilitate project execution by: Metadata verification and coordination with IMG , GOLD and others for data annotation and submission Tracking, monitoring and …
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Plant Program
… understanding of plant diversity and integrating various data types to explore the molecular mechanisms behind phenotypic evolution. It also utilizes advanced tools, including deep learning algorithms for gene … biology to ecosystem processes through model laboratory ecosystems. They are small plastic growth chambers where plants …
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Products
… sample receipt to completion of standard analysis.  Raw data is provided for all sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is complete. Raw metabolomics data is submitted to the  MassIVE repository . Not all …
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Integrating Experimentation with Data
Automated Laboratories: Integrating Experimentation with Data.” The event will take place at the Seattle Marriott … worldwide to explore complex biological and environmental systems using advanced experimental and informatic tools at no cost. The JGI and EMSL are supported by the …
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The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions
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The IMG/M data management and analysis system v.6.0: new tools and advanced capabilities
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