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… the user programs at the JGI, and I’m also the head of the microbial genome program. And I’m a scientist here. And have … for example, metatranscriptome sequencing, metagenomics, single cell genomics. We even do the flow cytometry for … and coastal. But we’ve kind of shied away from the ocean. Microbes. We’ve done those in the past, but the DOE …

… wouldn’t say I was one of these people that wants to study oceanography and was fascinated by the oceans, though I’ve … And sometimes, in terms of biological activities– like antimicrobial or something– sometimes a little difference is … both of those things have still very much done to be excellently. Dan Udwary: For sure. Kate Duncan: Not that …

Synthesis Program supports a wide range of projects, from single-gene synthesis to the synthesis of entire … bioinformatics tools and genome portals, we study lignocellulose decomposition, CO2 fixation, redox reactions, and … … Synthesis Capabilities & Offerings … BOOST … Integrated Microbial Genomes and Microbiomes … Mycocosm … Phytozome … …

… community as a user facility pioneering functional genomics to solve the most relevant bioenergy and … the Letter of Intent; rather proposals are submitted in a single step. … The researcher then submits a proposal for …

… demands of our users. … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic … provides tools for analyzing the functional capability of microbial communities based on their metagenome sequence, in … access, visualization, and analysis tools for comparative genomics of fungi. Mycocosm enables users to navigate across …

Celebrating 25 years of genomics research 2022 marked the JGI’s 25th anniversary. We … to advancing the frontiers of environmental and energy genomics. The two-story mural at the Integrative Genomics Building was painted by Berkeley-based artist Nigel …

The CSP Functional Genomics call is to enable users to perform state-of-the-art functional genomics research and to help them translate genomic …

… required documentation here .  … You can request a JGI Single Sign On account at https://signon.jgi.doe.gov . This … ) Metagenomes and Single Cells: IMG/M   (citation: … for functional annotation/curation of your genomes Microbial (IMG–ER) Metagenome and Single Cell (IMG/ M-ER) …

… into bioenergy and bioproducts. The program’s fungal genomics research explores new metabolic processes and … Program aims to streamline genome analysis workflows for microbial eukaryotes, build fungal and algal pangenomes, and … The program also explores microeukaryotic members of microbial communities, cataloging gene markers, and …

… in putting antibiotics together, getting them out of the cell letting them do their dirty work. So that’s one arm. … Canada. I just got back from a conference in Canada on antimicrobial resistance sponsored by the Garner foundation. And … sampling which we would look at different particles in the ocean and look at the micro organisms on those particles, as …

… a great opportunity to learn more about JGI, hear some excellent talk from our users and from other invited guests, … I did my undergraduate in microbiology and then PhD in microbial genetics in the UK. And came across to the US for … and the stabilized isotope probing work that we’re doing, single cell work we’re doing. And using these together along …

A deep dive into microbial genomics reveals one bacterial species is made of … The bacterium SAR324 is unusually cosmopolitan. In the ocean’s North Pacific Subtropical Gyre, microbes tend to … blue-lit twilight zone, to the continuous pressure of the dark abyss, 4000 m (2.5 miles) deep. Scientists have …