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… bit more into fungi and learning the differences of all the genetic differences and then expanded on on that knowledge … has been doing work in secondary metabolism. The very first CSP I ever worked on back in Brad’s lab, we talked about it … Genomics, there was a subsection of that called ABC, the Atlas of Biosynthetic Clusters. And at the time, it was a …

… DAN: Welcome back for episode 9 of Natural Prodcast. This week, … he’s been leading an effort to build The Natural Product Atlas , or NPAtlas, a freely accessible natural products … America brought to the UK? ROGER:  Yeah, it’s difficult to generalize, of course, but I felt overall that the British …

… proposals, sequencing, synthesis, metabolomics and analysis will be paid for by the Department of Energy’s funding of … the user and no granting of funds.    Proposal Call FICUS CSP Large Scale CSP New Investigator CSP Functional Genomics JGI-TMF … more about our individual calls and other opportunities to work with the JGI …

… See below for a list of Frequently Asked Questions about our proposal submission process. You can review successful letters of intent and submissions at the bottom … Review the list of open calls ; click on the call link to see … and instructions.  Many of the submissions are done using web-based forms.   To view the proposal templates, go to the …

… and analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those associated with microeukaryotes, enhances our understanding of … energy and ecosystem management. The program aims to generate high-quality genomic datasets, particularly for …

… Dan Udwary: You’re listening to the Department of Energy Joint … and BiG-SLiCE, and now the BiG-FAM database of biosynthetic gene cluster families. And he tells us about forthcoming … have you applied them? Dan Udwary: Well, at JGI we have the Atlas of Biosynthetic Clusters . And this is a very raw …

… the science and scientists of secondary metabolism.  DAN: Welcome back to Natural Prodcast! This is episode 4! From … conference, which took place a few weeks ago, in January of 2020. So, you might hear us referencing a conference, and … After I got my undergraduate degree, which was in general biology, I joined the Peace Corps. And when I was …

… of this is based on a really great paper that came out in 2020 where this is all explained in detail, so if you’d like … the active site of an enzyme. So there is no promiscuity, generally speaking, in primary metabolism. Nevertheless, … in very highly coevolved systems where a microbe becomes a symbiont, for example, of an ant. So these are very stable …

… The Community Science Program (CSP) provides the scientific community at large with access to high-throughput sequencing, synthesis, and … of disciplines. Three calls fall under the umbrella of our CSP: The Large Scale call is for expansive projects that … the completion of a project, the JGI makes the assemblies, gene annotations, and analyses available to the community at …

… and environmental solutions, fostering a bioeconomy powered by nature’s resources. … on large-scale sequencing efforts that survey the vast phylogenetic and ecological diversity of fungi and algae, … populations and engineered strains. This approach allows for the identification of key functional traits that have …

… the genomes of microbes in their natural environments. This work encompasses bacteria, archaea, and micro-eukaryoes, along with their associated viruses and mobile genetic elements. Beyond exploring and characterizing … of viral, microbial, and microeukaryote genomes and mobile genetic elements, linked to custom interfaces and …

… DAN UDWARY: You’re listening to the Department of Energy Joint … of it. So it wasn’t only chemistry or only biochemistry or genetics. It was also ecology. It was also evolution. It was … before yours, we had Roger Linnington on to talk about NP Atlas. And we got talking about what it would take to expand …